HL_8ZGY_056

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_056 not in the Motif Atlas

Homologous match to HL_8P9A_168

Geometric discrepancy: 0.0727

The information below is about HL_8P9A_168

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8ZGY|1|LA|C|2692
8ZGY|1|LA|A|2693
8ZGY|1|LA|A|2694
8ZGY|1|LA|A|2695
8ZGY|1|LA|A|2696
8ZGY|1|LA|G|2697
8ZGY|1|LA|G|2698
8ZGY|1|LA|G|2699

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain LV

Large ribosomal subunit protein eL21A

Chain Lq

Large ribosomal subunit protein eL42A