HL_8ZGY_059

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAAUUUG

Length

9 nucleotides

Bulged bases

8ZGY|1|LA|G|2776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_059 not in the Motif Atlas

Homologous match to HL_8CRE_059

Geometric discrepancy: 0.0642

The information below is about HL_8CRE_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8ZGY|1|LA|C|2775
8ZGY|1|LA|G|2776
8ZGY|1|LA|G|2777
8ZGY|1|LA|A|2778
8ZGY|1|LA|A|2779
8ZGY|1|LA|U|2780
8ZGY|1|LA|U|2781
8ZGY|1|LA|U|2782
8ZGY|1|LA|G|2783

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LN

Large ribosomal subunit protein eL13A

Chain Lc

Large ribosomal subunit protein uL15

Chain Lk

Large ribosomal subunit protein eL36A

Chain Lq

Large ribosomal subunit protein eL42A