HL_8ZGY_066

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8ZGY|1|LA|G|3115, 8ZGY|1|LA|C|3119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_066 not in the Motif Atlas

Homologous match to HL_8CRE_066

Geometric discrepancy: 0.0506

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8ZGY|1|LA|C|3109
8ZGY|1|LA|U|3110
8ZGY|1|LA|G|3111
8ZGY|1|LA|A|3112
8ZGY|1|LA|A|3113
8ZGY|1|LA|C|3114
8ZGY|1|LA|G|3115
8ZGY|1|LA|C|3116
8ZGY|1|LA|C|3117
8ZGY|1|LA|U|3118
8ZGY|1|LA|C|3119
8ZGY|1|LA|U|3120
8ZGY|1|LA|A|3121
8ZGY|1|LA|A|3122
8ZGY|1|LA|G|3123

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain LQ

Large ribosomal subunit protein uL13A

Chain Lo

Large ribosomal subunit protein eL40A