HL_8ZGY_068

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8ZGY|1|LA|A|3242, 8ZGY|1|LA|A|3243, 8ZGY|1|LA|G|3245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_068 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.0803

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8ZGY|1|LA|C|3239
8ZGY|1|LA|G|3240
8ZGY|1|LA|G|3241
8ZGY|1|LA|A|3242
8ZGY|1|LA|A|3243
8ZGY|1|LA|A|3244
8ZGY|1|LA|G|3245
8ZGY|1|LA|G|3246

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LQ

Large ribosomal subunit protein uL13A