HL_8ZGY_074
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8ZGY|1|LC|A|80, 8ZGY|1|LC|U|81, 8ZGY|1|LC|C|84, 8ZGY|1|LC|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZGY_074 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.2545
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51921.1
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8ZGY|1|LC|U|69
8ZGY|1|LC|G|70
8ZGY|1|LC|A|71
8ZGY|1|LC|A|72
8ZGY|1|LC|U|73
8ZGY|1|LC|U|74
8ZGY|1|LC|G|75
8ZGY|1|LC|C|76
8ZGY|1|LC|A|77
8ZGY|1|LC|G|78
8ZGY|1|LC|A|79
8ZGY|1|LC|A|80
8ZGY|1|LC|U|81
8ZGY|1|LC|U|82
8ZGY|1|LC|C|83
8ZGY|1|LC|C|84
8ZGY|1|LC|G|85
8ZGY|1|LC|U|86
8ZGY|1|LC|G|87
8ZGY|1|LC|A|88
8ZGY|1|LC|A|89
Current chains
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- Large ribosomal subunit protein uL24A
- Chain Lj
- Large ribosomal subunit protein uL29A
- Chain Ln
- Large ribosomal subunit protein eL39
Coloring options: