HL_8ZGY_076

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8ZGY|1|LC|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_076 not in the Motif Atlas

Homologous match to HL_8CRE_077

Geometric discrepancy: 0.1079

The information below is about HL_8CRE_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86883.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LC|G|124
8ZGY|1|LC|U|125
8ZGY|1|LC|A|126
8ZGY|1|LC|U|127
8ZGY|1|LC|U|128
8ZGY|1|LC|C|129

Current chains

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA