HL_8ZGY_077
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZGY_077 not in the Motif Atlas
- Geometric match to HL_8CRE_191
- Geometric discrepancy: 0.0781
- The information below is about HL_8CRE_191
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8ZGY|1|S2|G|7
8ZGY|1|S2|U|8
8ZGY|1|S2|U|9
8ZGY|1|S2|G|10
8ZGY|1|S2|A|11
8ZGY|1|S2|U|12
8ZGY|1|S2|C|13
8ZGY|1|S2|C|14
8ZGY|1|S2|U|15
8ZGY|1|S2|G|16
8ZGY|1|S2|C|17
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SR
- Small ribosomal subunit protein uS5
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain mR
- RNA (5'-R(P*GP*AP*UP*CP*CP*UP*UP*AP*AP*C)-3')
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