3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GUUGAUCCUGC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8ZGY_077 not in the Motif Atlas
Geometric match to HL_8CRE_191
Geometric discrepancy: 0.0781
The information below is about HL_8CRE_191
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89881.5
Basepair signature
cWW-tHW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8ZGY|1|S2|G|7
8ZGY|1|S2|U|8
8ZGY|1|S2|U|9
8ZGY|1|S2|G|10
8ZGY|1|S2|A|11
8ZGY|1|S2|U|12
8ZGY|1|S2|C|13
8ZGY|1|S2|C|14
8ZGY|1|S2|U|15
8ZGY|1|S2|G|16
8ZGY|1|S2|C|17

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SR
Small ribosomal subunit protein uS5
Chain Sc
Small ribosomal subunit protein uS12A
Chain mR
RNA (5'-R(P*GP*AP*UP*CP*CP*UP*UP*AP*AP*C)-3')

Coloring options:


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