HL_8ZGY_087

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUCCAAGGAAG

Length

12 nucleotides

Bulged bases

8ZGY|1|S2|A|416, 8ZGY|1|S2|A|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|S2|C|411
8ZGY|1|S2|A|412
8ZGY|1|S2|U|413
8ZGY|1|S2|C|414
8ZGY|1|S2|C|415
8ZGY|1|S2|A|416
8ZGY|1|S2|A|417
8ZGY|1|S2|G|418
8ZGY|1|S2|G|419
8ZGY|1|S2|A|420
8ZGY|1|S2|A|421
8ZGY|1|S2|G|422

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LX

Large ribosomal subunit protein uL14A

Chain ST

Small ribosomal subunit protein eS6A