HL_8ZGY_091

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_091 not in the Motif Atlas

Geometric match to HL_8CRE_205

Geometric discrepancy: 0.1572

The information below is about HL_8CRE_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8ZGY|1|S2|C|569
8ZGY|1|S2|A|570
8ZGY|1|S2|G|571
8ZGY|1|S2|C|572
8ZGY|1|S2|C|573
8ZGY|1|S2|G|574

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain Sc

Small ribosomal subunit protein uS12A

Chain mR

RNA (5'-R(P*GP*AP*UP*CP*CP*UP*UP*AP*AP*C)-3')