HL_8ZGY_104

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8ZGY|1|S2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_104 not in the Motif Atlas

Geometric match to HL_8CRE_219

Geometric discrepancy: 0.2103

The information below is about HL_8CRE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8ZGY|1|S2|C|1309
8ZGY|1|S2|U|1310
8ZGY|1|S2|U|1311
8ZGY|1|S2|A|1312
8ZGY|1|S2|A|1313
8ZGY|1|S2|U|1314
8ZGY|1|S2|U|1315
8ZGY|1|S2|G|1316

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A