HL_8ZGY_106

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8ZGY|1|S2|U|1398, 8ZGY|1|S2|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_106 not in the Motif Atlas

Geometric match to HL_8G9Z_003

Geometric discrepancy: 0.3343

The information below is about HL_8G9Z_003

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8ZGY|1|S2|U|1396
8ZGY|1|S2|U|1397
8ZGY|1|S2|U|1398
8ZGY|1|S2|C|1399
8ZGY|1|S2|A|1400
8ZGY|1|S2|A|1401
8ZGY|1|S2|G|1402

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A