HL_8ZGY_111

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_111 not in the Motif Atlas

Geometric match to HL_8CRE_225

Geometric discrepancy: 0.1392

The information below is about HL_8CRE_225

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8ZGY|1|S2|G|1778
8ZGY|1|S2|U|1779
8ZGY|1|S2|G|1780
8ZGY|1|S2|A|1781
8ZGY|1|S2|A|1782
8ZGY|1|S2|C|1783

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain Lp

Large ribosomal subunit protein eL41A