HL_8ZGY_114
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZGY_114 not in the Motif Atlas
- Homologous match to HL_8WND_005
- Geometric discrepancy: 0.5111
- The information below is about HL_8WND_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8ZGY|1|Tb|G|54
8ZGY|1|Tb|U|55
8ZGY|1|Tb|U|56
8ZGY|1|Tb|C|57
8ZGY|1|Tb|A|58
8ZGY|1|Tb|A|59
8ZGY|1|Tb|A|60
8ZGY|1|Tb|U|61
8ZGY|1|Tb|C|62
Current chains
- Chain Tb
- tRNA (77-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: