HL_8ZH3_029
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8ZH3|1|LA|G|1349, 8ZH3|1|LA|A|1350, 8ZH3|1|LA|U|1351, 8ZH3|1|LA|A|1352, 8ZH3|1|LA|U|1353, 8ZH3|1|LA|G|1354, 8ZH3|1|LA|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZH3_029 not in the Motif Atlas
- Homologous match to HL_9SUM_027
- Geometric discrepancy: 0.4787
- The information below is about HL_9SUM_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8ZH3|1|LA|U|1347
8ZH3|1|LA|U|1348
8ZH3|1|LA|G|1349
8ZH3|1|LA|A|1350
8ZH3|1|LA|U|1351
8ZH3|1|LA|A|1352
8ZH3|1|LA|U|1353
8ZH3|1|LA|G|1354
8ZH3|1|LA|A|1355
8ZH3|1|LA|U|1356
8ZH3|1|LA|G|1357
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LS
- Large ribosomal subunit protein eL18A
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