8ZH3 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8ZH3_001 | 1/LA/38:45 | No text annotation | homologous HL_8CRE_001 NA | |
| HL_8ZH3_002 | 1/LA/69:74 | No text annotation | homologous HL_8CRE_002 NA | |
| HL_8ZH3_003 | 1/LA/90:96 | No text annotation | homologous HL_8CRE_003 NA | |
| HL_8ZH3_004 | 1/LA/132:136 | No text annotation | homologous HL_8CRE_004 NA | |
| HL_8ZH3_005 | 1/LA/194:201 | T-loop with 1 bulged base | homologous HL_8P9A_117 HL_13999.3 | |
| HL_8ZH3_006 | 1/LA/208:212 | No text annotation | geometric HL_8CRE_006 NA | |
| HL_8ZH3_007 | 1/LA/216:224 | T-loop with unstacked turn | homologous HL_8CRE_007 NA | |
| HL_8ZH3_008 | 1/LA/278:287 | T-loop related | homologous HL_8CRE_008 NA | |
| HL_8ZH3_009 | 1/LA/303:312 | No text annotation | homologous HL_8P9A_121 HL_00911.2 | |
| HL_8ZH3_010 | 1/LA/357:362 | GNRA | homologous HL_8CRE_010 NA | |
| HL_8ZH3_011 | 1/LA/382:387 | GNRA | homologous HL_8CRE_011 NA | |
| HL_8ZH3_013 | 1/LA/599:604 | No text annotation | ||
| HL_8ZH3_014 | 1/LA/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_8ZH3_015 | 1/LA/686:694 | No text annotation | homologous HL_8CRE_014 NA | |
| HL_8ZH3_016 | 1/LA/707:712 | GNRA | homologous HL_8CRE_015 NA | |
| HL_8ZH3_017 | 1/LA/732:737 | No text annotation | ||
| HL_8ZH3_018 | 1/LA/763:768 | No text annotation | homologous HL_8CRE_017 NA | |
| HL_8ZH3_019 | 1/LA/844:849 | GNRA | homologous HL_8P9A_131 HL_34789.3 | |
| HL_8ZH3_020 | 1/LA/876:885 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_8ZH3_021 | 1/LA/910:918 | No text annotation | homologous HL_8P9A_133 HL_92598.1 | |
| HL_8ZH3_022 | 1/LA/958:963 | No text annotation | homologous HL_8CRE_021 NA | |
| HL_8ZH3_024 | 1/LA/1076:1083 | T-loop related | homologous HL_8P9A_136 HL_63894.2 | |
| HL_8ZH3_025 | 1/LA/1126:1132 | GNRA | homologous HL_8CRE_024 NA | |
| HL_8ZH3_026 | 1/LA/1148:1155 | No text annotation | homologous HL_8CRE_025 NA | |
| HL_8ZH3_029 | 1/LA/1347:1357 | No text annotation | ||
| HL_8ZH3_030 | 1/LA/1403:1408 | GNRA | homologous HL_8CRE_029 NA | |
| HL_8ZH3_031 | 1/LA/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_8ZH3_032 | 1/LA/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8CRE_031 NA | |
| HL_8ZH3_033 | 1/LA/1544:1549 | GNRA variation | homologous HL_8CRE_032 NA | |
| HL_8ZH3_035 | 1/LA/1599:1608 | No text annotation | homologous HL_8CRE_034 NA | |
| HL_8ZH3_036 | 1/LA/1634:1639 | GNRA | homologous HL_8CRE_035 NA | |
| HL_8ZH3_037 | 1/LA/1680:1688 | Pseudoknot geometry | homologous HL_8CRE_036 NA | |
| HL_8ZH3_038 | 1/LA/1719:1725 | No text annotation | ||
| HL_8ZH3_040 | 1/LA/1792:1796 | No text annotation | homologous HL_8CRE_039 NA | |
| HL_8ZH3_041 | 1/LA/1844:1851 | No text annotation | homologous HL_8CRE_040 NA | |
| HL_8ZH3_042 | 1/LA/1861:1869 | No text annotation | ||
| HL_8ZH3_043 | 1/LA/1923:1928 | UNCG | homologous HL_8CRE_042 NA | |
| HL_8ZH3_044 | 1/LA/2110:2114 | No text annotation | homologous HL_8CRE_043 NA | |
| HL_8ZH3_045 | 1/LA/2135:2145 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_8ZH3_046 | 1/LA/2164:2170 | GNRA | homologous HL_8CRE_045 NA | |
| HL_8ZH3_047 | 1/LA/2220:2225 | GNRA | homologous HL_8P9A_159 HL_34789.3 | |
| HL_8ZH3_048 | 1/LA/2253:2263 | No text annotation | homologous HL_8CRE_047 NA | |
| HL_8ZH3_049 | 1/LA/2292:2300 | No text annotation | homologous HL_8CRE_048 NA | |
| HL_8ZH3_050 | 1/LA/2369:2378 | No text annotation | homologous HL_8CRE_049 NA | |
| HL_8ZH3_051 | 1/LA/2535:2544 | No text annotation | ||
| HL_8ZH3_052 | 1/LA/2568:2573 | No text annotation | ||
| HL_8ZH3_053 | 1/LA/2616:2624 | No text annotation | homologous HL_8P9A_165 HL_11974.2 | |
| HL_8ZH3_054 | 1/LA/2633:2645 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_8ZH3_055 | 1/LA/2672:2682 | No text annotation | ||
| HL_8ZH3_056 | 1/LA/2693:2700 | Pseudoknot geometry | homologous HL_8P9A_168 HL_52651.2 | |
| HL_8ZH3_057 | 1/LA/2724:2732 | No text annotation | homologous HL_8CRE_057 NA | |
| HL_8ZH3_058 | 1/LA/2744:2749 | GNRA | homologous HL_8CRE_058 NA | |
| HL_8ZH3_059 | 1/LA/2776:2784 | Pseudoknot geometry | homologous HL_8P9A_171 HL_52651.2 | |
| HL_8ZH3_060 | 1/LA/2840:2848 | No text annotation | homologous HL_8CRE_060 NA | |
| HL_8ZH3_061 | 1/LA/2897:2904 | GNRA variation | homologous HL_8P9A_173 HL_46665.2 | |
| HL_8ZH3_062 | 1/LA/2920:2926 | No text annotation | homologous HL_8P9A_174 HL_48677.1 | |
| HL_8ZH3_063 | 1/LA/2963:2968 | GNRA | homologous HL_8CRE_063 NA | |
| HL_8ZH3_064 | 1/LA/3025:3030 | GNRA | homologous HL_8CRE_064 NA | |
| HL_8ZH3_065 | 1/LA/3068:3073 | No text annotation | ||
| HL_8ZH3_066 | 1/LA/3110:3124 | No text annotation | homologous HL_8CRE_066 NA | |
| HL_8ZH3_067 | 1/LA/3194:3197 | No text annotation | geometric HL_8CRE_004 NA | |
| HL_8ZH3_068 | 1/LA/3240:3247 | No text annotation | homologous HL_8P9A_180 HL_31089.1 | |
| HL_8ZH3_069 | 1/LA/3303:3311 | No text annotation | homologous HL_8CRE_069 NA | |
| HL_8ZH3_071 | 1/LB/32:45 | No text annotation | geometric HL_8OI5_068 HL_01182.1 | |
| HL_8ZH3_072 | 1/LB/36:41 | No text annotation | homologous HL_8OI5_069 HL_59381.2 | |
| HL_8ZH3_073 | 1/LB/88:93 | GNRA | homologous HL_8OI5_070 HL_34789.3 | |
| HL_8ZH3_074 | 1/LC/47:56 | No text annotation | homologous HL_8P9A_186 HL_17803.1 | |
| HL_8ZH3_075 | 1/LC/69:89 | No text annotation | homologous HL_8P9A_187 HL_68571.1 | |
| HL_8ZH3_076 | 1/LC/108:114 | No text annotation | homologous HL_8P9A_188 HL_13184.2 | |
| HL_8ZH3_077 | 1/LC/124:129 | No text annotation | homologous HL_8CRE_077 NA | |
| HL_8ZH3_078 | 1/S2/7:17 | No text annotation | geometric HL_8CRE_191 HL_73535.1 | |
| HL_8ZH3_079 | 1/S2/70:81 | tRNA D-loop | geometric HL_5E7K_218 NA | |
| HL_8ZH3_080 | 1/S2/154:160 | GNRA related | geometric HL_8CRE_193 HL_34789.3 | |
| HL_8ZH3_083 | 1/S2/243:250 | T-loop with 1 bulged base | geometric HL_8CRE_196 HL_67772.1 | |
| HL_8ZH3_085 | 1/S2/330:338 | No text annotation | geometric HL_8P9A_197 HL_87268.2 | |
| HL_8ZH3_086 | 1/S2/368:373 | GNRA variation | geometric HL_8CRE_199 HL_34789.3 | |
| HL_8ZH3_087 | 1/S2/393:404 | No text annotation | geometric HL_8CRE_200 HL_86432.1 | |
| HL_8ZH3_088 | 1/S2/414:419 | UNCG | geometric HL_8P9A_154 HL_61337.3 | |
| HL_8ZH3_089 | 1/S2/450:456 | No text annotation | geometric HL_8P9A_201 HL_89167.2 | |
| HL_8ZH3_091 | 1/S2/520:532 | No text annotation | geometric HL_8CRE_204 HL_68749.1 | |
| HL_8ZH3_092 | 1/S2/569:574 | No text annotation | geometric HL_8CRE_205 HL_93535.2 | |
| HL_8ZH3_093 | 1/S2/764:772 | No text annotation | geometric HL_8CRE_207 HL_11974.2 | |
| HL_8ZH3_094 | 1/S2/777:783 | No text annotation | ||
| HL_8ZH3_096 | 1/S2/900:909 | No text annotation | geometric HL_8CRE_210 HL_38491.2 | |
| HL_8ZH3_097 | 1/S2/937:942 | GNRA | geometric HL_8P9A_210 HL_34789.3 | |
| HL_8ZH3_098 | 1/S2/997:1007 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_8ZH3_099 | 1/S2/1055:1064 | No text annotation | ||
| HL_8ZH3_100 | 1/S2/1084:1089 | GNRA | geometric HL_8CRE_214 HL_34789.3 | |
| HL_8ZH3_101 | 1/S2/1121:1126 | GNRA | geometric HL_8CRE_215 HL_34789.3 | |
| HL_8ZH3_102 | 1/S2/1188:1197 | No text annotation | geometric HL_8CRE_216 HL_97521.1 | |
| HL_8ZH3_103 | 1/S2/1238:1247 | GNRA wlth extra near cWW | geometric HL_8CRE_217 HL_98423.3 | |
| HL_8ZH3_104 | 1/S2/1296:1301 | GNRA | geometric HL_8P9A_217 HL_34789.3 | |
| HL_8ZH3_105 | 1/S2/1309:1316 | T-loop related | geometric HL_8CRE_219 HL_63894.2 | |
| HL_8ZH3_106 | 1/S2/1359:1364 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.3 | |
| HL_8ZH3_107 | 1/S2/1396:1402 | GNRA related | geometric HL_8G9Z_003 HL_37569.3 | |
| HL_8ZH3_108 | 1/S2/1501:1506 | GNRA | geometric HL_9DID_002 HL_34789.3 | |
| HL_8ZH3_109 | 1/S2/1550:1561 | No text annotation | geometric HL_8CRE_223 HL_50951.1 | |
| HL_8ZH3_110 | 1/S2/1594:1602 | No text annotation | ||
| HL_8ZH3_112 | 1/S2/1778:1783 | GNRA variation | geometric HL_8CRE_225 HL_34789.3 | |
| HL_8ZH3_114 | 1/Ta/31:41 | No text annotation | ||
| HL_8ZH3_116 | 1/Tb/13:23 | tRNA D-loop | homologous HL_5UD5_001 HL_89167.2 | |
| HL_8ZH3_117 | 1/Tb/32:40 | tRNA anticodon loop | homologous HL_9DFC_104 NA | |
| HL_8ZH3_118 | 1/Tb/54:62 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8ZH3_012 | No text annotation | ||
| HL_8ZH3_023 | No text annotation | ||
| HL_8ZH3_027 | No text annotation | ||
| HL_8ZH3_028 | No text annotation | ||
| HL_8ZH3_034 | No text annotation | ||
| HL_8ZH3_039 | No text annotation | ||
| HL_8ZH3_070 | Mini UNCG | ||
| HL_8ZH3_081 | No text annotation | ||
| HL_8ZH3_082 | Mini UNCG | ||
| HL_8ZH3_084 | No text annotation | ||
| HL_8ZH3_090 | No text annotation | ||
| HL_8ZH3_095 | No text annotation | ||
| HL_8ZH3_111 | No text annotation | ||
| HL_8ZH3_113 | No text annotation | ||
| HL_8ZH3_115 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8ZH3_001 | 1/LA/7:8, 1/LC/150:152 | No text annotation | homologous IL_8CRE_002 NA | |
| IL_8ZH3_002 | 1/LA/13:15, 1/LC/144:145 | Single bulged U | homologous IL_8P9A_232 IL_97561.3 | |
| IL_8ZH3_003 | 1/LA/27:28, 1/LA/56:58 | Single stack bend | homologous IL_8CRE_004 NA | |
| IL_8ZH3_004 | 1/LA/31:38, 1/LA/45:53 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 NA | |
| IL_8ZH3_005 | 1/LA/82:89, 1/LA/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_53348.1 | |
| IL_8ZH3_006 | 1/LA/123:124, 1/LA/144:149 | No text annotation | homologous IL_8CRE_007 NA | |
| IL_8ZH3_007 | 1/LA/125:127, 1/LA/141:143 | Isolated non-canonical cWW pair | homologous IL_8CRE_008 NA | |
| IL_8ZH3_008 | 1/LA/163:166, 1/LA/256:258 | Isolated non-canonical cWW pair | geometric IL_2QEK_001 NA | |
| IL_8ZH3_009 | 1/LA/168:171, 1/LA/247:254 | No text annotation | ||
| IL_8ZH3_010 | 1/LA/176:178, 1/LA/238:242 | No text annotation | ||
| IL_8ZH3_011 | 1/LA/189:191, 1/LA/204:205 | No text annotation | homologous IL_8CRE_013 NA | |
| IL_8ZH3_012 | 1/LA/337:339, 1/LC/25:26 | Single bulged A | homologous IL_8P9A_242 IL_14190.2 | |
| IL_8ZH3_013 | 1/LA/376:379, 1/LA/390:403 | No text annotation | geometric IL_8CRE_015 NA | |
| IL_8ZH3_014 | 1/LA/404:410, 1/LC/13:19 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
| IL_8ZH3_015 | 1/LA/429:431, 1/LA/628:630 | Isolated non-canonical cWW pair | homologous IL_8P9A_245 IL_71625.2 | |
| IL_8ZH3_016 | 1/LA/512:513, 1/LA/577:579 | Single bulged A | homologous IL_8CRE_020 NA | |
| IL_8ZH3_017 | 1/LA/517:525, 1/LA/567:573 | No text annotation | homologous IL_8P9A_247 IL_06606.1 | |
| IL_8ZH3_018 | 1/LA/531:538, 1/LA/553:561 | No text annotation | homologous IL_8CRE_022 NA | |
| IL_8ZH3_019 | 1/LA/668:670, 1/LA/792:794 | Isolated non-canonical cWW pair | homologous IL_8CRE_023 NA | |
| IL_8ZH3_020 | 1/LA/680:684, 1/LA/696:700 | No text annotation | homologous IL_8P9A_250 IL_87030.1 | |
| IL_8ZH3_021 | 1/LA/725:728, 1/LA/741:745 | UAA/GAN variation | homologous IL_8CRE_025 NA | |
| IL_8ZH3_022 | 1/LA/752:753, 1/LA/779:781 | Single bulged A | homologous IL_8P9A_252 IL_14190.2 | |
| IL_8ZH3_023 | 1/LA/755:756, 1/LA/775:777 | No text annotation | homologous IL_8CRE_027 NA | |
| IL_8ZH3_024 | 1/LA/758:763, 1/LA/768:773 | No text annotation | homologous IL_8CRE_028 NA | |
| IL_8ZH3_025 | 1/LA/803:805, 1/LA/938:940 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.3 | |
| IL_8ZH3_026 | 1/LA/805:809, 1/LA/931:938 | No text annotation | homologous IL_8CRE_030 NA | |
| IL_8ZH3_027 | 1/LA/833:834, 1/LA/859:861 | No text annotation | homologous IL_8CRE_032 NA | |
| IL_8ZH3_028 | 1/LA/834:838, 1/LA/855:859 | Triple sheared | homologous IL_8CRE_033 NA | |
| IL_8ZH3_029 | 1/LA/869:872, 1/LA/888:890 | No text annotation | homologous IL_8CRE_034 NA | |
| IL_8ZH3_030 | 1/LA/873:875, 1/LA/886:887 | No text annotation | homologous IL_8CRE_035 NA | |
| IL_8ZH3_031 | 1/LA/907:909, 1/LA/919:923 | No text annotation | homologous IL_8CRE_036 NA | |
| IL_8ZH3_032 | 1/LA/954:956, 1/LA/965:967 | Isolated non-canonical cWW pair | homologous IL_8CRE_037 NA | |
| IL_8ZH3_033 | 1/LA/969:970, 1/LA/1111:1113 | Single stack bend | homologous IL_8CRE_038 NA | |
| IL_8ZH3_034 | 1/LA/972:974, 1/LA/1107:1109 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10892.2 | |
| IL_8ZH3_035 | 1/LA/977:982, 1/LA/1101:1104 | No text annotation | ||
| IL_8ZH3_036 | 1/LA/983:985, 1/LA/1099:1100 | No text annotation | homologous IL_8CRE_040 NA | |
| IL_8ZH3_037 | 1/LA/991:997, 1/LA/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_94128.1 | |
| IL_8ZH3_038 | 1/LA/997:998, 1/LA/1050:1052 | Minor groove platform | homologous IL_8CRE_042 NA | |
| IL_8ZH3_039 | 1/LA/999:1004, 1/LA/1046:1049 | C-loop with bulged stacked A's | homologous IL_8CRE_043 NA | |
| IL_8ZH3_040 | 1/LA/1006:1012, 1/LA/1038:1044 | No text annotation | ||
| IL_8ZH3_041 | 1/LA/1013:1019, 1/LA/1033:1037 | No text annotation | ||
| IL_8ZH3_042 | 1/LA/1069:1071, 1/LA/1087:1089 | No text annotation | ||
| IL_8ZH3_043 | 1/LA/1074:1076, 1/LA/1083:1084 | No text annotation | homologous IL_8CRE_048 NA | |
| IL_8ZH3_044 | 1/LA/1120:1122, 1/LA/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8CRE_049 NA | |
| IL_8ZH3_045 | 1/LA/1167:1171, 1/LA/1328:1332 | UAA/GAN | homologous IL_8CRE_051 NA | |
| IL_8ZH3_046 | 1/LA/1173:1180, 1/LA/1325:1326 | SSU/LSU pseudoknot | homologous IL_8P9A_277 IL_07396.1 | |
| IL_8ZH3_047 | 1/LA/1180:1182, 1/LA/1324:1325 | Single bulged U | homologous IL_8P9A_278 IL_97561.3 | |
| IL_8ZH3_048 | 1/LA/1187:1194, 1/LA/1314:1319 | No text annotation | homologous IL_8CRE_054 NA | |
| IL_8ZH3_049 | 1/LA/1194:1205, 1/LA/1299:1314 | No text annotation | homologous IL_8CRE_055 NA | |
| IL_8ZH3_050 | 1/LA/1207:1209, 1/LA/1296:1297 | No text annotation | homologous IL_8CRE_056 NA | |
| IL_8ZH3_051 | 1/LA/1217:1226, 1/LA/1283:1288 | No text annotation | ||
| IL_8ZH3_055 | 1/LA/1376:1378, 1/LA/1428:1431 | No text annotation | homologous IL_8P9A_285 IL_42997.5 | |
| IL_8ZH3_056 | 1/LA/1385:1387, 1/LA/1420:1421 | Single bulged A | homologous IL_8CRE_062 NA | |
| IL_8ZH3_057 | 1/LA/1388:1395, 1/LA/1415:1419 | Kink-turn | homologous IL_8CRE_063 NA | |
| IL_8ZH3_058 | 1/LA/1398:1400, 1/LA/1411:1412 | Single bulged A | homologous IL_8P9A_288 IL_14190.2 | |
| IL_8ZH3_059 | 1/LA/1444:1450, 1/LA/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_8ZH3_060 | 1/LA/1501:1505, 1/LA/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_8ZH3_061 | 1/LA/1532:1536, 1/LA/1585:1590 | UAA/GAN | homologous IL_8CRE_067 NA | |
| IL_8ZH3_062 | 1/LA/1618:1621, 1/LA/1824:1826 | No text annotation | homologous IL_8CRE_069 NA | |
| IL_8ZH3_063 | 1/LA/1623:1624, 1/LA/1819:1822 | No text annotation | homologous IL_8CRE_070 NA | |
| IL_8ZH3_064 | 1/LA/1627:1631, 1/LA/1811:1816 | No text annotation | homologous IL_8CRE_071 NA | |
| IL_8ZH3_065 | 1/LA/1645:1649, 1/LA/1806:1810 | Triple sheared | homologous IL_8CRE_072 NA | |
| IL_8ZH3_066 | 1/LA/1661:1663, 1/LA/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8CRE_073 NA | |
| IL_8ZH3_067 | 1/LA/1669:1670, 1/LA/1778:1780 | Single bulged C | homologous IL_8P9A_297 IL_05642.2 | |
| IL_8ZH3_068 | 1/LA/1670:1671, 1/LA/1776:1778 | Single stack bend | homologous IL_8CRE_075 NA | |
| IL_8ZH3_069 | 1/LA/1694:1698, 1/LA/1747:1752 | No text annotation | homologous IL_8P9A_299 IL_25943.1 | |
| IL_8ZH3_070 | 1/LA/1702:1707, 1/LA/1737:1743 | No text annotation | homologous IL_8P9A_300 IL_00680.1 | |
| IL_8ZH3_071 | 1/LA/1711:1717, 1/LA/1727:1733 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_8ZH3_072 | 1/LA/1883:1889, 1/LA/2346:2349 | No text annotation | homologous IL_8CRE_079 NA | |
| IL_8ZH3_073 | 1/LA/1895:1897, 1/LA/2338:2340 | No text annotation | homologous IL_8CRE_080 NA | |
| IL_8ZH3_074 | 1/LA/1898:1901, 1/LA/2336:2337 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.2 | |
| IL_8ZH3_075 | 1/LA/1898:1906, 1/LA/2333:2337 | No text annotation | geometric IL_8CRE_082 NA | |
| IL_8ZH3_076 | 1/LA/1901:1906, 1/LA/2333:2336 | No text annotation | homologous IL_8CRE_083 NA | |
| IL_8ZH3_077 | 1/LA/1918:1923, 1/LA/1928:1934 | No text annotation | homologous IL_8CRE_084 NA | |
| IL_8ZH3_078 | 1/LA/1940:1942, 1/LA/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8CRE_085 NA | |
| IL_8ZH3_079 | 1/LA/1947:1948, 1/LA/2098:2101 | No text annotation | ||
| IL_8ZH3_080 | 1/LA/1951:1953, 1/LA/2094:2095 | No text annotation | ||
| IL_8ZH3_081 | 1/LA/2128:2129, 1/LA/2323:2325 | Single bulged A | homologous IL_8CRE_087 NA | |
| IL_8ZH3_082 | 1/LA/2156:2161, 1/LA/2173:2180 | No text annotation | homologous IL_8CRE_088 NA | |
| IL_8ZH3_083 | 1/LA/2196:2199, 1/LA/2245:2246 | Minor groove platform, major groove intercalation | homologous IL_8CRE_089 NA | |
| IL_8ZH3_084 | 1/LA/2200:2201, 1/LA/2241:2244 | No text annotation | homologous IL_8CRE_090 NA | |
| IL_8ZH3_085 | 1/LA/2204:2210, 1/LA/2235:2238 | No text annotation | ||
| IL_8ZH3_086 | 1/LA/2211:2217, 1/LA/2228:2234 | No text annotation | homologous IL_8CRE_093 NA | |
| IL_8ZH3_087 | 1/LA/2276:2277, 1/LA/2307:2310 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_8ZH3_088 | 1/LA/2277:2288, 1/LA/2304:2307 | No text annotation | homologous IL_8CRE_095 NA | |
| IL_8ZH3_089 | 1/LA/2391:2394, 1/LA/2986:2988 | No text annotation | homologous IL_8P9A_319 IL_75527.2 | |
| IL_8ZH3_090 | 1/LA/2396:2398, 1/LA/2981:2984 | No text annotation | homologous IL_8CRE_097 NA | |
| IL_8ZH3_091 | 1/LA/2409:2411, 1/LA/2811:2812 | No text annotation | homologous IL_8CRE_098 NA | |
| IL_8ZH3_092 | 1/LA/2412:2413, 1/LA/2807:2810 | Minor groove platform | homologous IL_8CRE_099 NA | |
| IL_8ZH3_093 | 1/LA/2423:2425, 1/LA/2604:2607 | No text annotation | homologous IL_8CRE_100 NA | |
| IL_8ZH3_095 | 1/LA/2520:2526, 1/LA/2584:2587 | No text annotation | homologous IL_8CRE_106 NA | |
| IL_8ZH3_096 | 1/LA/2614:2615, 1/LA/2625:2627 | Single bulged A | homologous IL_8P9A_325 IL_14190.2 | |
| IL_8ZH3_097 | 1/LA/2666:2668, 1/LA/2686:2690 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
| IL_8ZH3_098 | 1/LA/2718:2721, 1/LA/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.2 | |
| IL_8ZH3_099 | 1/LA/2770:2773, 1/LA/2787:2788 | No text annotation | homologous IL_8CRE_110 NA | |
| IL_8ZH3_100 | 1/LA/2823:2824, 1/LA/2865:2867 | Major groove platform | homologous IL_8P9A_329 IL_48076.8 | |
| IL_8ZH3_101 | 1/LA/2824:2826, 1/LA/2863:2865 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.3 | |
| IL_8ZH3_102 | 1/LA/2826:2830, 1/LA/2858:2863 | No text annotation | ||
| IL_8ZH3_103 | 1/LA/2835:2839, 1/LA/2849:2853 | Double sheared with non-canonical cWW | homologous IL_8CRE_114 NA | |
| IL_8ZH3_104 | 1/LA/2876:2877, 1/LA/2949:2951 | No text annotation | homologous IL_8CRE_115 NA | |
| IL_8ZH3_105 | 1/LA/2879:2881, 1/LA/2943:2947 | Isolated non-canonical cWW with bulges | homologous IL_8CRE_116 NA | |
| IL_8ZH3_106 | 1/LA/2881:2882, 1/LA/2940:2943 | No text annotation | homologous IL_8CRE_117 NA | |
| IL_8ZH3_107 | 1/LA/2889:2891, 1/LA/2912:2914 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_01003.3 | |
| IL_8ZH3_108 | 1/LA/2889:2892, 1/LA/2909:2914 | No text annotation | geometric IL_8P9A_338 IL_07469.3 | |
| IL_8ZH3_109 | 1/LA/2891:2892, 1/LA/2909:2912 | No text annotation | homologous IL_8CRE_120 NA | |
| IL_8ZH3_110 | 1/LA/2918:2920, 1/LA/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8CRE_121 NA | |
| IL_8ZH3_111 | 1/LA/2960:2961, 1/LA/2970:2972 | Single bulged A | geometric IL_8P9A_399 IL_14190.2 | |
| IL_8ZH3_112 | 1/LA/3004:3007, 1/LA/3139:3144 | Double sheared | homologous IL_8P9A_342 IL_58355.2 | |
| IL_8ZH3_113 | 1/LA/3012:3015, 1/LA/3039:3042 | Tandem non-canonical cWW pairs | geometric IL_4EYA_008 IL_65740.1 | |
| IL_8ZH3_114 | 1/LA/3018:3025, 1/LA/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.3 | |
| IL_8ZH3_115 | 1/LA/3047:3051, 1/LA/3091:3094 | No text annotation | homologous IL_8P9A_345 IL_06671.1 | |
| IL_8ZH3_116 | 1/LA/3054:3059, 1/LA/3084:3088 | No text annotation | homologous IL_8CRE_127 NA | |
| IL_8ZH3_117 | 1/LA/3063:3064, 1/LA/3077:3080 | No text annotation | homologous IL_8CRE_128 NA | |
| IL_8ZH3_118 | 1/LA/3103:3107, 1/LA/3127:3131 | UAA/GAN | homologous IL_8CRE_129 NA | |
| IL_8ZH3_119 | 1/LA/3164:3166, 1/LA/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8CRE_130 NA | |
| IL_8ZH3_120 | 1/LA/3168:3170, 1/LA/3280:3282 | Isolated non-canonical cWW pair | homologous IL_8P9A_350 IL_71625.2 | |
| IL_8ZH3_121 | 1/LA/3177:3179, 1/LA/3210:3211 | Single bulged A | homologous IL_8P9A_351 IL_14190.2 | |
| IL_8ZH3_122 | 1/LA/3179:3188, 1/LA/3204:3210 | No text annotation | homologous IL_8P9A_352 IL_28855.1 | |
| IL_8ZH3_123 | 1/LA/3193:3194, 1/LA/3197:3199 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_8ZH3_124 | 1/LA/3225:3229, 1/LA/3258:3260 | No text annotation | ||
| IL_8ZH3_125 | 1/LA/3233:3235, 1/LA/3252:3254 | Isolated non-canonical cWW pair | homologous IL_8P9A_354 IL_01003.3 | |
| IL_8ZH3_126 | 1/LA/3235:3238, 1/LA/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_8CRE_134 NA | |
| IL_8ZH3_127 | 1/LA/3300:3303, 1/LA/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_8CRE_135 NA | |
| IL_8ZH3_128 | 1/LA/3318:3320, 1/LA/3387:3388 | No text annotation | homologous IL_8CRE_136 NA | |
| IL_8ZH3_129 | 1/LA/3324:3325, 1/LA/3381:3383 | Single bulged U | homologous IL_8P9A_358 IL_97561.3 | |
| IL_8ZH3_130 | 1/LA/3328:3330, 1/LA/3373:3378 | No text annotation | homologous IL_8CRE_138 NA | |
| IL_8ZH3_131 | 1/LA/3332:3337, 1/LA/3367:3371 | No text annotation | homologous IL_8CRE_139 NA | |
| IL_8ZH3_132 | 1/LA/3340:3342, 1/LA/3363:3364 | No text annotation | homologous IL_8CRE_140 NA | |
| IL_8ZH3_133 | 1/LA/3342:3345, 1/LA/3360:3363 | Double sheared; A in syn | homologous IL_8P9A_362 IL_58355.2 | |
| IL_8ZH3_135 | 1/LB/15:16, 1/LB/63:65 | Single bulged A | homologous IL_8P9A_364 IL_14190.2 | |
| IL_8ZH3_136 | 1/LB/21:27, 1/LB/53:58 | No text annotation | homologous IL_8OI5_135 IL_41504.1 | |
| IL_8ZH3_137 | 1/LB/28:29, 1/LB/49:52 | No text annotation | homologous IL_8OI5_136 IL_87975.1 | |
| IL_8ZH3_138 | 1/LB/29:30, 1/LB/47:49 | Single stack bend | homologous IL_8P9A_367 IL_15011.2 | |
| IL_8ZH3_139 | 1/LB/32:36, 1/LB/41:45 | No text annotation | homologous IL_8OI5_138 IL_58103.12 | |
| IL_8ZH3_140 | 1/LB/72:80, 1/LB/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_369 IL_62167.3 | |
| IL_8ZH3_141 | 1/LB/84:87, 1/LB/94:96 | Isolated non-canonical cWW pair | homologous IL_8OI5_140 IL_01003.3 | |
| IL_8ZH3_142 | 1/LC/64:66, 1/LC/93:96 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
| IL_8ZH3_143 | 1/LC/68:69, 1/LC/89:91 | Single bulged U | homologous IL_8P9A_372 IL_97561.3 | |
| IL_8ZH3_144 | 1/S2/24:26, 1/S2/600:601 | Single bulged C | geometric IL_8F5G_002 IL_05642.2 | |
| IL_8ZH3_145 | 1/S2/35:37, 1/S2/471:473 | Isolated non-canonical cWW pair | geometric IL_8P9A_374 IL_01003.3 | |
| IL_8ZH3_146 | 1/S2/37:41, 1/S2/466:471 | No text annotation | geometric IL_8CRE_392 IL_12697.1 | |
| IL_8ZH3_147 | 1/S2/42:48, 1/S2/431:433 | No text annotation | geometric IL_8P9A_376 IL_88082.2 | |
| IL_8ZH3_148 | 1/S2/50:52, 1/S2/428:429 | Minor groove platform | geometric IL_8CRE_394 IL_34520.3 | |
| IL_8ZH3_149 | 1/S2/58:63, 1/S2/87:89 | No text annotation | geometric IL_8P9A_378 IL_61299.6 | |
| IL_8ZH3_150 | 1/S2/64:69, 1/S2/82:86 | No text annotation | geometric IL_8P9A_379 IL_21667.2 | |
| IL_8ZH3_151 | 1/S2/109:112, 1/S2/302:305 | Tandem non-canonical cWW pairs | geometric IL_8P9A_380 IL_71194.2 | |
| IL_8ZH3_152 | 1/S2/113:116, 1/S2/300:301 | Multiple bulged bases | geometric IL_8P9A_381 IL_71421.2 | |
| IL_8ZH3_153 | 1/S2/117:122, 1/S2/295:299 | No text annotation | geometric IL_8CRE_399 IL_31545.1 | |
| IL_8ZH3_154 | 1/S2/144:149, 1/S2/165:171 | No text annotation | ||
| IL_8ZH3_155 | 1/S2/150:153, 1/S2/161:164 | Tandem non-canonical cWW pairs | geometric IL_422D_001 NA | |
| IL_8ZH3_157 | 1/S2/204:206, 1/S2/259:263 | Isolated non-canonical cWW pair | geometric IL_5B2P_002 IL_71625.2 | |
| IL_8ZH3_158 | 1/S2/206:210, 1/S2/255:259 | No text annotation | ||
| IL_8ZH3_159 | 1/S2/265:267, 1/S2/288:289 | Single bulged A | geometric IL_8P9A_388 IL_14190.2 | |
| IL_8ZH3_160 | 1/S2/270:272, 1/S2/284:285 | No text annotation | ||
| IL_8ZH3_161 | 1/S2/275:276, 1/S2/279:281 | Single bulged U | geometric IL_5F9R_003 NA | |
| IL_8ZH3_162 | 1/S2/311:316, 1/S2/348:355 | Kink-turn with non-sequential stacking | geometric IL_8CRE_408 IL_46174.4 | |
| IL_8ZH3_163 | 1/S2/318:323, 1/S2/345:346 | No text annotation | ||
| IL_8ZH3_164 | 1/S2/363:365, 1/S2/376:381 | No text annotation | geometric IL_8CRE_410 IL_93336.1 | |
| IL_8ZH3_165 | 1/S2/389:391, 1/S2/406:408 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.2 | |
| IL_8ZH3_166 | 1/S2/411:413, 1/S2/420:422 | No text annotation | geometric IL_8CRE_412 IL_42997.5 | |
| IL_8ZH3_167 | 1/S2/439:441, 1/S2/463:464 | Single bulged U | geometric IL_8P9A_396 IL_97561.3 | |
| IL_8ZH3_168 | 1/S2/443:447, 1/S2/460:461 | C-loop | geometric IL_8CRE_414 IL_26900.1 | |
| IL_8ZH3_169 | 1/S2/447:448, 1/S2/458:460 | No text annotation | geometric IL_8CRE_415 IL_28408.2 | |
| IL_8ZH3_173 | 1/S2/514:516, 1/S2/536:543 | No text annotation | ||
| IL_8ZH3_174 | 1/S2/517:518, 1/S2/533:535 | Minor groove platform | geometric IL_4LFB_004 IL_34520.3 | |
| IL_8ZH3_175 | 1/S2/518:520, 1/S2/532:533 | Minor groove platform | geometric IL_5T83_003 IL_34520.3 | |
| IL_8ZH3_176 | 1/S2/550:557, 1/S2/587:588 | SSU/LSU pseudoknot | geometric IL_8CRE_421 IL_11411.1 | |
| IL_8ZH3_177 | 1/S2/557:559, 1/S2/586:587 | No text annotation | geometric IL_8CRE_422 IL_97561.3 | |
| IL_8ZH3_178 | 1/S2/562:568, 1/S2/575:583 | No text annotation | geometric IL_8P9A_404 IL_52042.1 | |
| IL_8ZH3_179 | 1/S2/616:622, 1/S2/1104:1105 | No text annotation | geometric IL_8CRE_424 IL_20847.1 | |
| IL_8ZH3_180 | 1/S2/624:626, 1/S2/973:975 | Isolated non-canonical cWW pair | geometric IL_8P9A_406 IL_01003.3 | |
| IL_8ZH3_181 | 1/S2/627:631, 1/S2/968:972 | tSH-tHW-tHS | geometric IL_8CRE_426 IL_05821.1 | |
| IL_8ZH3_182 | 1/S2/646:648, 1/S2/686:688 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.2 | |
| IL_8ZH3_183 | 1/S2/746:747, 1/S2/802:805 | No text annotation | geometric IL_8P9A_412 IL_73108.2 | |
| IL_8ZH3_184 | 1/S2/748:750, 1/S2/799:801 | Isolated non-canonical cWW pair | geometric IL_8P9A_413 IL_71625.2 | |
| IL_8ZH3_185 | 1/S2/751:759, 1/S2/791:798 | No text annotation | ||
| IL_8ZH3_186 | 1/S2/817:824, 1/S2/848:854 | No text annotation | ||
| IL_8ZH3_187 | 1/S2/865:866, 1/S2/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_74641.2 | |
| IL_8ZH3_188 | 1/S2/868:869, 1/S2/958:960 | Single bulged U | geometric IL_8P9A_427 IL_97561.3 | |
| IL_8ZH3_189 | 1/S2/871:873, 1/S2/954:956 | Isolated non-canonical cWW pair | geometric IL_7QUA_003 IL_01003.3 | |
| IL_8ZH3_190 | 1/S2/874:878, 1/S2/950:953 | Tandem non-canonical cWW pairs | geometric IL_8CRE_434 IL_15225.2 | |
| IL_8ZH3_191 | 1/S2/885:888, 1/S2/924:927 | Tandem non-canonical cWW pairs | geometric IL_8P9A_421 IL_15225.2 | |
| IL_8ZH3_192 | 1/S2/893:899, 1/S2/910:919 | No text annotation | geometric IL_8P9A_422 IL_57741.1 | |
| IL_8ZH3_193 | 1/S2/985:990, 1/S2/1014:1016 | No text annotation | geometric IL_8CRE_437 IL_31359.1 | |
| IL_8ZH3_194 | 1/S2/990:994, 1/S2/1010:1014 | tSH-tHW-tHS | geometric IL_4WF9_052 IL_05821.1 | |
| IL_8ZH3_195 | 1/S2/1034:1036, 1/S2/1095:1101 | No text annotation | geometric IL_8CRE_439 IL_82706.2 | |
| IL_8ZH3_196 | 1/S2/1041:1044, 1/S2/1074:1077 | Tandem non-canonical cWW pairs | geometric IL_8CRE_440 IL_15225.2 | |
| IL_8ZH3_197 | 1/S2/1051:1053, 1/S2/1066:1067 | No text annotation | geometric IL_8CRE_056 NA | |
| IL_8ZH3_198 | 1/S2/1111:1118, 1/S2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_8CRE_442 IL_84044.1 | |
| IL_8ZH3_199 | 1/S2/1146:1147, 1/S2/1630:1632 | Single bulged A | geometric IL_5J7L_039 NA | |
| IL_8ZH3_200 | 1/S2/1149:1151, 1/S2/1627:1628 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_8ZH3_201 | 1/S2/1157:1160, 1/S2/1617:1621 | C-loop | geometric IL_8CRE_445 IL_63596.12 | |
| IL_8ZH3_202 | 1/S2/1173:1175, 1/S2/1464:1466 | Isolated non-canonical cWW pair | geometric IL_8CRE_446 IL_01003.3 | |
| IL_8ZH3_203 | 1/S2/1178:1179, 1/S2/1459:1461 | Minor groove platform | geometric IL_6DTD_003 IL_34520.3 | |
| IL_8ZH3_204 | 1/S2/1213:1215, 1/S2/1448:1450 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.3 | |
| IL_8ZH3_205 | 1/S2/1224:1233, 1/S2/1252:1259 | No text annotation | ||
| IL_8ZH3_206 | 1/S2/1234:1237, 1/S2/1248:1251 | Tandem non-canonical cWW pairs | geometric IL_6DTD_001 IL_59580.1 | |
| IL_8ZH3_207 | 1/S2/1268:1270, 1/S2/1440:1441 | No text annotation | geometric IL_8CRE_451 IL_97561.3 | |
| IL_8ZH3_208 | 1/S2/1272:1276, 1/S2/1436:1438 | No text annotation | geometric IL_8CRE_452 IL_82453.1 | |
| IL_8ZH3_209 | 1/S2/1272:1278, 1/S2/1430:1438 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_8ZH3_210 | 1/S2/1276:1278, 1/S2/1430:1436 | No text annotation | geometric IL_8P9A_440 IL_34117.1 | |
| IL_8ZH3_211 | 1/S2/1280:1281, 1/S2/1426:1428 | Single bulged A | geometric IL_8CRE_455 IL_14190.2 | |
| IL_8ZH3_212 | 1/S2/1290:1292, 1/S2/1323:1325 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10892.2 | |
| IL_8ZH3_213 | 1/S2/1306:1308, 1/S2/1317:1318 | Minor groove platform | geometric IL_8P9A_443 IL_34520.3 | |
| IL_8ZH3_214 | 1/S2/1339:1342, 1/S2/1383:1385 | Isolated non-canonical cWW pair | geometric IL_8P9A_444 IL_01003.3 | |
| IL_8ZH3_215 | 1/S2/1345:1348, 1/S2/1377:1380 | No text annotation | geometric IL_8CRE_481 IL_78800.2 | |
| IL_8ZH3_216 | 1/S2/1352:1354, 1/S2/1369:1373 | No text annotation | ||
| IL_8ZH3_217 | 1/S2/1389:1391, 1/S2/1407:1412 | No text annotation | geometric IL_8P9A_447 IL_94684.1 | |
| IL_8ZH3_218 | 1/S2/1480:1487, 1/S2/1519:1527 | No text annotation | geometric IL_8P9A_448 IL_91698.1 | |
| IL_8ZH3_219 | 1/S2/1488:1494, 1/S2/1513:1518 | No text annotation | ||
| IL_8ZH3_220 | 1/S2/1495:1498, 1/S2/1509:1512 | No text annotation | ||
| IL_8ZH3_221 | 1/S2/1540:1545, 1/S2/1566:1571 | No text annotation | geometric IL_8CRE_465 IL_57885.2 | |
| IL_8ZH3_222 | 1/S2/1636:1638, 1/S2/1764:1767 | No text annotation | geometric IL_8CRE_466 IL_18228.1 | |
| IL_8ZH3_223 | 1/S2/1638:1641, 1/S2/1760:1764 | No text annotation | geometric IL_8P9A_453 IL_25873.2 | |
| IL_8ZH3_224 | 1/S2/1642:1644, 1/S2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_8CRE_468 IL_01003.3 | |
| IL_8ZH3_225 | 1/S2/1644:1647, 1/S2/1753:1757 | No text annotation | geometric IL_8CRE_469 IL_73099.1 | |
| IL_8ZH3_226 | 1/S2/1650:1652, 1/S2/1748:1750 | Isolated non-canonical cWW pair | geometric IL_8P9A_456 IL_01003.3 | |
| IL_8ZH3_227 | 1/S2/1653:1656, 1/S2/1744:1747 | Double sheared | geometric IL_8CRE_471 IL_58355.2 | |
| IL_8ZH3_228 | 1/S2/1656:1658, 1/S2/1743:1744 | Single bulged U | geometric IL_8P9A_458 IL_97561.3 | |
| IL_8ZH3_229 | 1/S2/1665:1667, 1/S2/1734:1736 | No text annotation | ||
| IL_8ZH3_230 | 1/S2/1669:1672, 1/S2/1729:1732 | Double sheared | geometric IL_8CRE_474 IL_58355.2 | |
| IL_8ZH3_231 | 1/S2/1672:1674, 1/S2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_8CRE_085 NA | |
| IL_8ZH3_232 | 1/S2/1675:1678, 1/S2/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_8P9A_462 IL_71194.2 | |
| IL_8ZH3_233 | 1/S2/1678:1682, 1/S2/1719:1723 | Triple sheared | geometric IL_8CRE_476 IL_15190.2 | |
| IL_8ZH3_236 | 1/S2/1696:1698, 1/S2/1703:1706 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8ZH3_052 | No text annotation | ||
| IL_8ZH3_053 | No text annotation | ||
| IL_8ZH3_054 | No text annotation | ||
| IL_8ZH3_094 | No text annotation | ||
| IL_8ZH3_134 | No text annotation | ||
| IL_8ZH3_156 | No text annotation | ||
| IL_8ZH3_170 | No text annotation | ||
| IL_8ZH3_171 | No text annotation | ||
| IL_8ZH3_172 | Minor groove platform | ||
| IL_8ZH3_234 | No text annotation | ||
| IL_8ZH3_235 | No text annotation | ||
| IL_8ZH3_237 | Single stack bend | ||
| IL_8ZH3_238 | No text annotation | ||
| IL_8ZH3_239 | No text annotation | ||
| IL_8ZH3_240 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8ZH3_001 | 1/LA/113:123, 1/LA/149:158, 1/LA/263:267 | No text annotation | homologous J3_8CRE_001 NA | |
| J3_8ZH3_002 | 1/LA/113:124, 1/LA/144:158, 1/LA/263:267 | No text annotation | ||
| J3_8ZH3_003 | 1/LA/185:189, 1/LA/205:214, 1/LA/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_8ZH3_004 | 1/LA/340:356, 1/LA/363:368, 1/LC/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8ZH3_005 | 1/LA/369:376, 1/LA/403:404, 1/LC/19:20 | No text annotation | geometric J3_8CRE_005 NA | |
| J3_8ZH3_006 | 1/LA/369:379, 1/LA/390:404, 1/LC/19:20 | No text annotation | homologous J3_8CRE_006 NA | |
| J3_8ZH3_007 | 1/LA/435:443, 1/LA/491:495, 1/LA/618:624 | No text annotation | ||
| J3_8ZH3_008 | 1/LA/502:503, 1/LA/588:597, 1/LA/606:611 | No text annotation | homologous J3_8P9A_048 J3_86133.1 | |
| J3_8ZH3_009 | 1/LA/814:820, 1/LA/905:907, 1/LA/923:926 | No text annotation | homologous J3_8CRE_009 NA | |
| J3_8ZH3_010 | 1/LA/828:831, 1/LA/863:867, 1/LA/892:897 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_8ZH3_011 | 1/LA/986:987, 1/LA/1062:1066, 1/LA/1092:1098 | No text annotation | homologous J3_8CRE_011 NA | |
| J3_8ZH3_013 | 1/LA/1479:1485, 1/LA/1857:1859, 1/LA/1871:1874 | No text annotation | homologous J3_8CRE_013 NA | |
| J3_8ZH3_014 | 1/LA/1488:1491, 1/LA/1837:1843, 1/LA/1852:1854 | No text annotation | homologous J3_8P9A_054 J3_76012.1 | |
| J3_8ZH3_015 | 1/LA/1526:1531, 1/LA/1591:1595, 1/LA/1612:1613 | No text annotation | homologous J3_8CRE_015 NA | |
| J3_8ZH3_016 | 1/LA/1537:1542, 1/LA/1551:1560, 1/LA/1579:1584 | No text annotation | ||
| J3_8ZH3_017 | 1/LA/1631:1632, 1/LA/1641:1645, 1/LA/1810:1811 | No text annotation | homologous J3_8CRE_017 NA | |
| J3_8ZH3_018 | 1/LA/1654:1658, 1/LA/1791:1792, 1/LA/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_8ZH3_019 | 1/LA/2432:2435, 1/LA/2512:2517, 1/LA/2590:2597 | No text annotation | homologous J3_8CRE_019 NA | |
| J3_8ZH3_020 | 1/LA/2529:2533, 1/LA/2546:2563, 1/LA/2578:2581 | No text annotation | ||
| J3_8ZH3_021 | 1/LA/2651:2653, 1/LA/2754:2765, 1/LA/2793:2798 | No text annotation | homologous J3_8CRE_021 NA | |
| J3_8ZH3_022 | 1/LA/2664:2666, 1/LA/2690:2692, 1/LA/2701:2706 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_8ZH3_023 | 1/LA/2886:2889, 1/LA/2914:2916, 1/LA/2930:2936 | No text annotation | homologous J3_8P9A_063 J3_44047.1 | |
| J3_8ZH3_024 | 1/LA/3171:3176, 1/LA/3212:3220, 1/LA/3265:3279 | No text annotation | ||
| J3_8ZH3_025 | 1/LA/3298:3300, 1/LA/3314:3318, 1/LA/3388:3390 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_8ZH3_026 | 1/LB/9:14, 1/LB/66:67, 1/LB/111:112 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_8ZH3_027 | 1/LC/44:45, 1/LC/58:64, 1/LC/96:100 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J3_8ZH3_028 | 1/S2/41:42, 1/S2/433:439, 1/S2/464:466 | No text annotation | geometric J3_8CRE_071 J3_58657.1 | |
| J3_8ZH3_029 | 1/S2/41:48, 1/S2/431:439, 1/S2/464:466 | No text annotation | geometric J3_8P9A_069 J3_63856.1 | |
| J3_8ZH3_030 | 1/S2/213:228, 1/S2/237:243, 1/S2/250:252 | No text annotation | ||
| J3_8ZH3_031 | 1/S2/633:635, 1/S2/861:865, 1/S2/965:966 | No text annotation | geometric J3_8P9A_071 J3_01633.1 | |
| J3_8ZH3_032 | 1/S2/633:635, 1/S2/861:866, 1/S2/962:966 | No text annotation | geometric J3_8P9A_072 J3_17385.5 | |
| J3_8ZH3_033 | 1/S2/760:763, 1/S2/773:775, 1/S2/785:790 | No text annotation | geometric J3_8P9A_073 J3_97642.2 | |
| J3_8ZH3_034 | 1/S2/881:884, 1/S2/928:936, 1/S2/943:947 | No text annotation | geometric J3_8P9A_074 J3_23895.1 | |
| J3_8ZH3_035 | 1/S2/1037:1039, 1/S2/1079:1083, 1/S2/1090:1094 | No text annotation | geometric J3_8CRE_077 J3_94999.1 | |
| J3_8ZH3_036 | 1/S2/1161:1164, 1/S2/1581:1587, 1/S2/1609:1616 | No text annotation | ||
| J3_8ZH3_037 | 1/S2/1168:1171, 1/S2/1468:1470, 1/S2/1574:1577 | No text annotation | geometric J3_8CRE_079 J3_44359.1 | |
| J3_8ZH3_038 | 1/S2/1180:1187, 1/S2/1198:1209, 1/S2/1454:1458 | No text annotation | geometric J3_8CRE_080 J3_88451.1 | |
| J3_8ZH3_039 | 1/S2/1215:1220, 1/S2/1263:1267, 1/S2/1442:1448 | No text annotation | geometric J3_8CRE_081 J3_87797.2 | |
| J3_8ZH3_040 | 1/S2/1283:1288, 1/S2/1327:1332, 1/S2/1419:1424 | No text annotation | ||
| J3_8ZH3_041 | 1/S2/1293:1294, 1/S2/1303:1306, 1/S2/1318:1322 | No text annotation | geometric J3_8CRE_083 J3_76043.4 | |
| J3_8ZH3_042 | 1/S2/1336:1338, 1/S2/1386:1389, 1/S2/1412:1415 | No text annotation | geometric J3_8CRE_084 J3_82365.5 | |
| J3_8ZH3_043 | 1/S2/1336:1338, 1/S2/1386:1391, 1/S2/1407:1415 | No text annotation | geometric J3_8P9A_083 J3_88233.1 | |
| J3_8ZH3_044 | 1/S2/1470:1474, 1/S2/1533:1540, 1/S2/1571:1574 | No text annotation | geometric J3_8CRE_086 J3_03192.1 | |
| J4_8ZH3_001 | 1/LA/112:113, 1/LA/267:272, 1/LA/293:299, 1/LA/316:319 | No text annotation | homologous J4_8CRE_001 NA | |
| J4_8ZH3_002 | 1/LA/185:189, 1/LA/205:208, 1/LA/212:214, 1/LA/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_8ZH3_003 | 1/LA/1451:1457, 1/LA/1475:1476, 1/LA/1877:1880, 1/LA/2352:2353 | No text annotation | homologous J4_8CRE_003 NA | |
| J4_8ZH3_004 | 1/LA/1492:1496, 1/LA/1520:1525, 1/LA/1614:1615, 1/LA/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_8ZH3_005 | 1/LA/1674:1675, 1/LA/1693:1694, 1/LA/1752:1753, 1/LA/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_75575.1 | |
| J4_8ZH3_006 | 1/LA/2130:2134, 1/LA/2146:2150, 1/LA/2186:2190, 1/LA/2317:2322 | No text annotation | homologous J4_8CRE_006 NA | |
| J4_8ZH3_007 | 1/LA/2192:2194, 1/LA/2248:2249, 1/LA/2267:2276, 1/LA/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_8ZH3_008 | 1/LA/2654:2658, 1/LA/2712:2716, 1/LA/2740:2742, 1/LA/2751:2753 | No text annotation | homologous J4_8CRE_008 NA | |
| J4_8ZH3_009 | 1/LA/3010:3012, 1/LA/3042:3043, 1/LA/3098:3100, 1/LA/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_8ZH3_010 | 1/S2/99:107, 1/S2/307:309, 1/S2/357:361, 1/S2/383:384 | No text annotation | ||
| J4_8ZH3_011 | 1/S2/622:624, 1/S2/975:980, 1/S2/1021:1032, 1/S2/1103:1104 | No text annotation | ||
| J4_8ZH3_012 | 1/Ta/7:10, 1/Ta/25:29, 1/Ta/43:50, 1/Ta/66:67 | No text annotation | ||
| J4_8ZH3_013 | 1/Ta/7:12, 1/Ta/24:29, 1/Ta/43:50, 1/Ta/66:67 | No text annotation | ||
| J4_8ZH3_014 | 1/Tb/7:10, 1/Tb/26:28, 1/Tb/44:50, 1/Tb/66:67 | tRNA junction | homologous J4_1IL2_001 J4_95067.1 | |
| J5_8ZH3_001 | 1/LA/20:22, 1/LC/35:42, 1/LC/102:107, 1/LC/115:116, 1/LC/137:139 | No text annotation | homologous J5_8CRE_001 NA | |
| J5_8ZH3_002 | 1/LA/658:663, 1/LA/799:802, 1/LA/941:944, 1/LA/1375:1376, 1/LA/1431:1437 | No text annotation | homologous J5_8CRE_002 NA | |
| J5_8ZH3_003 | 1/LA/675:678, 1/LA/702:706, 1/LA/713:721, 1/LA/749:751, 1/LA/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_8ZH3_004 | 1/LA/1906:1914, 1/LA/1938:1939, 1/LA/2109:2110, 1/LA/2114:2122, 1/LA/2331:2333 | No text annotation | homologous J5_8CRE_004 NA | |
| J5_8ZH3_005 | 1/LA/2399:2406, 1/LA/2815:2823, 1/LA/2867:2876, 1/LA/2951:2957, 1/LA/2975:2980 | No text annotation | ||
| J5_8ZH3_006 | 1/LA/2416:2419, 1/LA/2611:2614, 1/LA/2627:2628, 1/LA/2650:2651, 1/LA/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_8ZH3_007 | 1/S2/31:35, 1/S2/473:479, 1/S2/509:514, 1/S2/543:546, 1/S2/592:595 | No text annotation | ||
| J5_8ZH3_008 | 1/S2/31:35, 1/S2/473:479, 1/S2/509:516, 1/S2/536:546, 1/S2/592:595 | No text annotation | ||
| J5_8ZH3_009 | 1/S2/54:57, 1/S2/90:97, 1/S2/386:388, 1/S2/409:411, 1/S2/422:426 | No text annotation | ||
| J5_8ZH3_010 | 1/S2/124:143, 1/S2/172:182, 1/S2/203:204, 1/S2/263:265, 1/S2/289:293 | No text annotation | ||
| J5_8ZH3_011 | 1/S2/124:143, 1/S2/172:182, 1/S2/203:204, 1/S2/263:267, 1/S2/288:293 | No text annotation | ||
| J5_8ZH3_012 | 1/S2/636:641, 1/S2/693:699, 1/S2/739:744, 1/S2/807:817, 1/S2/854:860 | No text annotation | ||
| J6_8ZH3_001 | 1/LA/22:27, 1/LA/58:68, 1/LA/75:79, 1/LA/106:110, 1/LA/321:331, 1/LC/32:35 | No text annotation | ||
| J6_8ZH3_002 | 1/LA/2416:2419, 1/LA/2611:2614, 1/LA/2627:2628, 1/LA/2650:2653, 1/LA/2754:2765, 1/LA/2793:2804 | No text annotation | ||
| J7_8ZH3_001 | 1/LA/949:954, 1/LA/967:968, 1/LA/1114:1117, 1/LA/1141:1146, 1/LA/1157:1161, 1/LA/1338:1339, 1/LA/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8ZH3_012 | No text annotation |
Coloring options: