HL_8ZH3_044

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

8ZH3|1|LA|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_044 not in the Motif Atlas

Homologous match to HL_8CRE_043

Geometric discrepancy: 0.1129

The information below is about HL_8CRE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78677.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8ZH3|1|LA|G|2110
8ZH3|1|LA|G|2111
8ZH3|1|LA|U|2112
8ZH3|1|LA|A|2113
8ZH3|1|LA|C|2114

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain LY

Large ribosomal subunit protein eL24A