HL_8ZH3_050

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8ZH3|1|LA|A|2372, 8ZH3|1|LA|A|2373, 8ZH3|1|LA|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_050 not in the Motif Atlas

Homologous match to HL_8CRE_049

Geometric discrepancy: 0.0473

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8ZH3|1|LA|G|2369
8ZH3|1|LA|G|2370
8ZH3|1|LA|G|2371
8ZH3|1|LA|A|2372
8ZH3|1|LA|A|2373
8ZH3|1|LA|C|2374
8ZH3|1|LA|G|2375
8ZH3|1|LA|G|2376
8ZH3|1|LA|G|2377
8ZH3|1|LA|C|2378

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain Lg

Large ribosomal subunit protein eL32

Chain Lh

Large ribosomal subunit protein eL33A