HL_8ZH3_051

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

8ZH3|1|LA|A|2536, 8ZH3|1|LA|U|2537, 8ZH3|1|LA|U|2538, 8ZH3|1|LA|C|2539, 8ZH3|1|LA|A|2540, 8ZH3|1|LA|U|2541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZH3|1|LA|A|2535
8ZH3|1|LA|A|2536
8ZH3|1|LA|U|2537
8ZH3|1|LA|U|2538
8ZH3|1|LA|C|2539
8ZH3|1|LA|A|2540
8ZH3|1|LA|U|2541
8ZH3|1|LA|U|2542
8ZH3|1|LA|U|2543
8ZH3|1|LA|U|2544

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LJ

Large ribosomal subunit protein eL8A

Chain SQ

Small ribosomal subunit protein eS1A