HL_8ZH3_053

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8ZH3|1|LA|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_053 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.0635

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8ZH3|1|LA|C|2616
8ZH3|1|LA|U|2617
8ZH3|1|LA|G|2618
8ZH3|1|LA|G|2619
8ZH3|1|LA|G|2620
8ZH3|1|LA|G|2621
8ZH3|1|LA|C|2622
8ZH3|1|LA|G|2623
8ZH3|1|LA|G|2624

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain Ld

Large ribosomal subunit protein eL29

Chain Ta

Transfer RNA; tRNA