HL_8ZH3_060

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8ZH3|1|LA|U|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_060 not in the Motif Atlas

Homologous match to HL_8CRE_060

Geometric discrepancy: 0.1483

The information below is about HL_8CRE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8ZH3|1|LA|C|2840
8ZH3|1|LA|G|2841
8ZH3|1|LA|U|2842
8ZH3|1|LA|U|2843
8ZH3|1|LA|C|2844
8ZH3|1|LA|A|2845
8ZH3|1|LA|U|2846
8ZH3|1|LA|A|2847
8ZH3|1|LA|G|2848

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain Lo

Large ribosomal subunit protein eL40A