HL_8ZH3_068

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8ZH3|1|LA|A|3243, 8ZH3|1|LA|A|3244, 8ZH3|1|LA|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_068 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.0915

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8ZH3|1|LA|C|3240
8ZH3|1|LA|G|3241
8ZH3|1|LA|G|3242
8ZH3|1|LA|A|3243
8ZH3|1|LA|A|3244
8ZH3|1|LA|A|3245
8ZH3|1|LA|G|3246
8ZH3|1|LA|G|3247

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LQ

Large ribosomal subunit protein uL13A