HL_8ZH3_077

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8ZH3|1|LC|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_077 not in the Motif Atlas

Homologous match to HL_8CRE_077

Geometric discrepancy: 0.1341

The information below is about HL_8CRE_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86883.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

8ZH3|1|LC|G|124
8ZH3|1|LC|U|125
8ZH3|1|LC|A|126
8ZH3|1|LC|U|127
8ZH3|1|LC|U|128
8ZH3|1|LC|C|129

Current chains

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA