HL_8ZH3_079
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAUUUAUACAG
- Length
- 12 nucleotides
- Bulged bases
- 8ZH3|1|S2|U|73, 8ZH3|1|S2|U|74, 8ZH3|1|S2|U|75, 8ZH3|1|S2|A|76, 8ZH3|1|S2|U|77, 8ZH3|1|S2|A|78, 8ZH3|1|S2|C|79, 8ZH3|1|S2|A|80
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZH3_079 not in the Motif Atlas
- Geometric match to HL_5E7K_218
- Geometric discrepancy: 0.3298
- The information below is about HL_5E7K_218
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- tRNA D-loop
- Motif group
- HL_48417.5
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 26
Unit IDs
8ZH3|1|S2|C|70
8ZH3|1|S2|A|71
8ZH3|1|S2|A|72
8ZH3|1|S2|U|73
8ZH3|1|S2|U|74
8ZH3|1|S2|U|75
8ZH3|1|S2|A|76
8ZH3|1|S2|U|77
8ZH3|1|S2|A|78
8ZH3|1|S2|C|79
8ZH3|1|S2|A|80
8ZH3|1|S2|G|81
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain ST
- Small ribosomal subunit protein eS6A
Coloring options: