HL_8ZH3_082

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8ZH3|1|S2|U|232, 8ZH3|1|S2|C|233, 8ZH3|1|S2|G|234

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_082 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.1885

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8ZH3|1|S2|C|230
8ZH3|1|S2|U|231
8ZH3|1|S2|U|232
8ZH3|1|S2|C|233
8ZH3|1|S2|G|234
8ZH3|1|S2|G|235

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains