HL_8ZH3_085
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAUAGUGGC
- Length
- 9 nucleotides
- Bulged bases
- 8ZH3|1|S2|G|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZH3_085 not in the Motif Atlas
- Geometric match to HL_8P9A_197
- Geometric discrepancy: 0.0514
- The information below is about HL_8P9A_197
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8ZH3|1|S2|G|330
8ZH3|1|S2|A|331
8ZH3|1|S2|U|332
8ZH3|1|S2|A|333
8ZH3|1|S2|G|334
8ZH3|1|S2|U|335
8ZH3|1|S2|G|336
8ZH3|1|S2|G|337
8ZH3|1|S2|C|338
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SX
- Small ribosomal subunit protein uS17A
Coloring options: