HL_8ZH3_086
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZH3_086 not in the Motif Atlas
- Geometric match to HL_8CRE_199
- Geometric discrepancy: 0.2879
- The information below is about HL_8CRE_199
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
8ZH3|1|S2|U|368
8ZH3|1|S2|A|369
8ZH3|1|S2|A|370
8ZH3|1|S2|G|371
8ZH3|1|S2|G|372
8ZH3|1|S2|G|373
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SR
- Small ribosomal subunit protein uS5
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Sc
- Small ribosomal subunit protein uS12A
Coloring options: