HL_8ZH3_089

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8ZH3|1|S2|A|452, 8ZH3|1|S2|U|454, 8ZH3|1|S2|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_089 not in the Motif Atlas

Geometric match to HL_8P9A_201

Geometric discrepancy: 0.3053

The information below is about HL_8P9A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8ZH3|1|S2|U|450
8ZH3|1|S2|A|451
8ZH3|1|S2|A|452
8ZH3|1|S2|U|453
8ZH3|1|S2|U|454
8ZH3|1|S2|C|455
8ZH3|1|S2|A|456

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain Sd

Small ribosomal subunit protein eS24A