HL_8ZH3_103

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8ZH3|1|S2|G|1243, 8ZH3|1|S2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_103 not in the Motif Atlas

Geometric match to HL_8CRE_217

Geometric discrepancy: 0.151

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8ZH3|1|S2|A|1238
8ZH3|1|S2|U|1239
8ZH3|1|S2|U|1240
8ZH3|1|S2|G|1241
8ZH3|1|S2|A|1242
8ZH3|1|S2|G|1243
8ZH3|1|S2|A|1244
8ZH3|1|S2|G|1245
8ZH3|1|S2|C|1246
8ZH3|1|S2|U|1247

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31