HL_8ZH3_106

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

8ZH3|1|S2|U|1361, 8ZH3|1|S2|U|1362, 8ZH3|1|S2|U|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_106 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2277

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8ZH3|1|S2|C|1359
8ZH3|1|S2|A|1360
8ZH3|1|S2|U|1361
8ZH3|1|S2|U|1362
8ZH3|1|S2|U|1363
8ZH3|1|S2|G|1364

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SI

Small ribosomal subunit protein eS19A