HL_8ZH3_107

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8ZH3|1|S2|U|1398, 8ZH3|1|S2|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_107 not in the Motif Atlas

Geometric match to HL_8G9Z_003

Geometric discrepancy: 0.3159

The information below is about HL_8G9Z_003

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZH3|1|S2|U|1396
8ZH3|1|S2|U|1397
8ZH3|1|S2|U|1398
8ZH3|1|S2|C|1399
8ZH3|1|S2|A|1400
8ZH3|1|S2|A|1401
8ZH3|1|S2|G|1402

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A