HL_8ZH3_108

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_108 not in the Motif Atlas

Geometric match to HL_9DID_002

Geometric discrepancy: 0.1122

The information below is about HL_9DID_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8ZH3|1|S2|C|1501
8ZH3|1|S2|G|1502
8ZH3|1|S2|A|1503
8ZH3|1|S2|G|1504
8ZH3|1|S2|A|1505
8ZH3|1|S2|G|1506

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain SH

Small ribosomal subunit protein uS13A

Chain SI

Small ribosomal subunit protein eS19A