HL_8ZH3_116

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGCCCGGUAG

Length

11 nucleotides

Bulged bases

8ZH3|1|Tb|C|16, 8ZH3|1|Tb|C|17, 8ZH3|1|Tb|C|18, 8ZH3|1|Tb|G|19, 8ZH3|1|Tb|G|20, 8ZH3|1|Tb|U|21, 8ZH3|1|Tb|A|22

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_116 not in the Motif Atlas

Homologous match to HL_5UD5_001

Geometric discrepancy: 0.5463

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8ZH3|1|Tb|C|13
8ZH3|1|Tb|A|14
8ZH3|1|Tb|G|15
8ZH3|1|Tb|C|16
8ZH3|1|Tb|C|17
8ZH3|1|Tb|C|18
8ZH3|1|Tb|G|19
8ZH3|1|Tb|G|20
8ZH3|1|Tb|U|21
8ZH3|1|Tb|A|22
8ZH3|1|Tb|G|23

Current chains

Chain Tb

tRNA (77-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain SK

Small ribosomal subunit protein eS25A