HL_8ZH3_117
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCUGUCAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZH3_117 not in the Motif Atlas
- Homologous match to HL_9DFC_104
- Geometric discrepancy: 0.1383
- The information below is about HL_9DFC_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8ZH3|1|Tb|G|32
8ZH3|1|Tb|C|33
8ZH3|1|Tb|U|34
8ZH3|1|Tb|G|35
8ZH3|1|Tb|U|36
8ZH3|1|Tb|C|37
8ZH3|1|Tb|A|38
8ZH3|1|Tb|A|39
8ZH3|1|Tb|C|40
Current chains
- Chain Tb
- tRNA (77-MER)
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain mR
- RNA (5'-R(P*AP*UP*UP*GP*AP*CP*CP*CP*UP*U)-3')
Coloring options: