HL_8ZHB_021

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8ZHB|1|LA|A|912, 8ZHB|1|LA|G|915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHB_021 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.0568

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79004.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8ZHB|1|LA|G|909
8ZHB|1|LA|C|910
8ZHB|1|LA|G|911
8ZHB|1|LA|A|912
8ZHB|1|LA|A|913
8ZHB|1|LA|A|914
8ZHB|1|LA|G|915
8ZHB|1|LA|A|916
8ZHB|1|LA|C|917

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Ll

Large ribosomal subunit protein eL37A