HL_8ZHB_045

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

8ZHB|1|LA|A|2137, 8ZHB|1|LA|A|2138, 8ZHB|1|LA|U|2139, 8ZHB|1|LA|A|2143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHB_045 not in the Motif Atlas

Homologous match to HL_8P9A_157

Geometric discrepancy: 0.0689

The information below is about HL_8P9A_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZHB|1|LA|U|2134
8ZHB|1|LA|C|2135
8ZHB|1|LA|U|2136
8ZHB|1|LA|A|2137
8ZHB|1|LA|A|2138
8ZHB|1|LA|U|2139
8ZHB|1|LA|U|2140
8ZHB|1|LA|A|2141
8ZHB|1|LA|A|2142
8ZHB|1|LA|A|2143
8ZHB|1|LA|A|2144

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Ll

Large ribosomal subunit protein eL37A