3D structure

PDB id
8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with A/A P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
AGAAAGU
Length
7 nucleotides
Bulged bases
8ZHB|1|LA|G|2168
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8ZHB_046 not in the Motif Atlas
Homologous match to HL_8CRE_045
Geometric discrepancy: 0.076
The information below is about HL_8CRE_045
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8ZHB|1|LA|A|2163
8ZHB|1|LA|G|2164
8ZHB|1|LA|A|2165
8ZHB|1|LA|A|2166
8ZHB|1|LA|A|2167
8ZHB|1|LA|G|2168
8ZHB|1|LA|U|2169

Current chains

Chain LA
25S rRNA (3393-MER)

Nearby chains

Chain LD
Large ribosomal subunit protein uL2A
Chain LJ
Large ribosomal subunit protein eL8A
Chain LP
Large ribosomal subunit protein eL15A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1546 s