HL_8ZHB_088
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UAAUUCA
- Length
- 7 nucleotides
- Bulged bases
- 8ZHB|1|S2|U|454, 8ZHB|1|S2|C|455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHB_088 not in the Motif Atlas
- Homologous match to HL_9PN5_088
- Geometric discrepancy: 0.5348
- The information below is about HL_9PN5_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25795.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8ZHB|1|S2|U|450
8ZHB|1|S2|A|451
8ZHB|1|S2|A|452
8ZHB|1|S2|U|453
8ZHB|1|S2|U|454
8ZHB|1|S2|C|455
8ZHB|1|S2|A|456
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain Sd
- Small ribosomal subunit protein eS24A
Coloring options: