HL_8ZHC_006

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

8ZHC|1|LA|U|210, 8ZHC|1|LA|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_006 not in the Motif Atlas

Geometric match to HL_8CRE_006

Geometric discrepancy: 0.1009

The information below is about HL_8CRE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8ZHC|1|LA|C|208
8ZHC|1|LA|A|209
8ZHC|1|LA|U|210
8ZHC|1|LA|A|211
8ZHC|1|LA|G|212

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A