8ZHC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8ZHC_001 | 1/LA/38:45 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_8ZHC_002 | 1/LA/69:74 | No text annotation | homologous HL_8CRE_002 NA | |
| HL_8ZHC_003 | 1/LA/90:96 | No text annotation | homologous HL_8CRE_003 NA | |
| HL_8ZHC_004 | 1/LA/132:136 | No text annotation | homologous HL_8CRE_004 NA | |
| HL_8ZHC_005 | 1/LA/194:201 | T-loop with 1 bulged base | homologous HL_8P9A_117 HL_13999.3 | |
| HL_8ZHC_006 | 1/LA/208:212 | No text annotation | geometric HL_8CRE_006 NA | |
| HL_8ZHC_007 | 1/LA/216:224 | T-loop with unstacked turn | homologous HL_8CRE_007 NA | |
| HL_8ZHC_008 | 1/LA/278:287 | T-loop related | homologous HL_8CRE_008 NA | |
| HL_8ZHC_009 | 1/LA/303:312 | No text annotation | homologous HL_8P9A_121 HL_00911.2 | |
| HL_8ZHC_010 | 1/LA/357:362 | GNRA | homologous HL_8CRE_010 NA | |
| HL_8ZHC_011 | 1/LA/382:387 | GNRA | homologous HL_8CRE_011 NA | |
| HL_8ZHC_013 | 1/LA/598:603 | No text annotation | ||
| HL_8ZHC_014 | 1/LA/639:648 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_8ZHC_015 | 1/LA/685:693 | No text annotation | homologous HL_8CRE_014 NA | |
| HL_8ZHC_016 | 1/LA/706:711 | GNRA | homologous HL_8CRE_015 NA | |
| HL_8ZHC_018 | 1/LA/762:767 | No text annotation | homologous HL_8CRE_017 NA | |
| HL_8ZHC_019 | 1/LA/843:848 | GNRA | homologous HL_8P9A_131 HL_34789.4 | |
| HL_8ZHC_020 | 1/LA/875:884 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_8ZHC_021 | 1/LA/909:917 | No text annotation | homologous HL_8P9A_133 HL_92598.1 | |
| HL_8ZHC_022 | 1/LA/957:962 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_8ZHC_024 | 1/LA/1075:1082 | T-loop related | homologous HL_8P9A_136 HL_63894.2 | |
| HL_8ZHC_025 | 1/LA/1125:1131 | GNRA | homologous HL_8P9A_137 HL_34789.4 | |
| HL_8ZHC_026 | 1/LA/1147:1154 | No text annotation | homologous HL_8CRE_025 NA | |
| HL_8ZHC_029 | 1/LA/1346:1356 | No text annotation | ||
| HL_8ZHC_030 | 1/LA/1402:1407 | GNRA | homologous HL_8CRE_029 NA | |
| HL_8ZHC_031 | 1/LA/1460:1470 | No text annotation | ||
| HL_8ZHC_032 | 1/LA/1505:1511 | Pseudoknot geometry with 3' bulge | homologous HL_8CRE_031 NA | |
| HL_8ZHC_033 | 1/LA/1543:1548 | GNRA variation | homologous HL_8CRE_032 NA | |
| HL_8ZHC_034 | 1/LA/1564:1573 | No text annotation | ||
| HL_8ZHC_035 | 1/LA/1598:1607 | No text annotation | homologous HL_8P9A_146 HL_77449.1 | |
| HL_8ZHC_036 | 1/LA/1633:1638 | GNRA | homologous HL_8CRE_035 NA | |
| HL_8ZHC_037 | 1/LA/1679:1687 | No text annotation | ||
| HL_8ZHC_038 | 1/LA/1718:1724 | No text annotation | ||
| HL_8ZHC_040 | 1/LA/1791:1795 | No text annotation | homologous HL_8CRE_039 NA | |
| HL_8ZHC_041 | 1/LA/1843:1850 | No text annotation | homologous HL_8CRE_040 NA | |
| HL_8ZHC_042 | 1/LA/1861:1867 | GNRA | homologous HL_8P9A_153 HL_34789.4 | |
| HL_8ZHC_043 | 1/LA/1922:1927 | UNCG | homologous HL_8CRE_042 NA | |
| HL_8ZHC_044 | 1/LA/2109:2113 | No text annotation | homologous HL_8P9A_156 HL_16651.1 | |
| HL_8ZHC_045 | 1/LA/2134:2144 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_8ZHC_046 | 1/LA/2163:2169 | GNRA | homologous HL_8CRE_045 NA | |
| HL_8ZHC_047 | 1/LA/2210:2233 | No text annotation | ||
| HL_8ZHC_048 | 1/LA/2252:2262 | No text annotation | homologous HL_8CRE_047 NA | |
| HL_8ZHC_049 | 1/LA/2291:2299 | No text annotation | homologous HL_8CRE_048 NA | |
| HL_8ZHC_050 | 1/LA/2368:2377 | No text annotation | homologous HL_8CRE_049 NA | |
| HL_8ZHC_052 | 1/LA/2567:2572 | Mini UNCG | geometric HL_4V9F_021 HL_90436.3 | |
| HL_8ZHC_053 | 1/LA/2615:2623 | No text annotation | homologous HL_8P9A_165 HL_11974.2 | |
| HL_8ZHC_054 | 1/LA/2632:2644 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_8ZHC_055 | 1/LA/2670:2682 | No text annotation | ||
| HL_8ZHC_056 | 1/LA/2692:2699 | Pseudoknot geometry | homologous HL_8P9A_168 HL_52651.2 | |
| HL_8ZHC_057 | 1/LA/2723:2731 | No text annotation | homologous HL_8CRE_057 NA | |
| HL_8ZHC_058 | 1/LA/2743:2748 | GNRA | homologous HL_8CRE_058 NA | |
| HL_8ZHC_059 | 1/LA/2775:2783 | Pseudoknot geometry | homologous HL_8CRE_059 NA | |
| HL_8ZHC_060 | 1/LA/2839:2847 | No text annotation | homologous HL_8CRE_060 NA | |
| HL_8ZHC_061 | 1/LA/2895:2904 | No text annotation | geometric HL_2DER_005 HL_37889.1 | |
| HL_8ZHC_062 | 1/LA/2919:2925 | No text annotation | homologous HL_8CRE_062 NA | |
| HL_8ZHC_063 | 1/LA/2962:2967 | GNRA | homologous HL_8CRE_063 NA | |
| HL_8ZHC_064 | 1/LA/3024:3029 | GNRA related | geometric HL_3OXE_002 HL_37569.3 | |
| HL_8ZHC_065 | 1/LA/3067:3072 | No text annotation | homologous HL_8CRE_065 NA | |
| HL_8ZHC_066 | 1/LA/3109:3123 | No text annotation | homologous HL_8P9A_178 HL_53269.2 | |
| HL_8ZHC_067 | 1/LA/3192:3198 | No text annotation | ||
| HL_8ZHC_068 | 1/LA/3239:3246 | No text annotation | homologous HL_8P9A_180 HL_31089.1 | |
| HL_8ZHC_069 | 1/LA/3302:3310 | No text annotation | homologous HL_8CRE_069 NA | |
| HL_8ZHC_071 | 1/LB/36:41 | No text annotation | homologous HL_8OI5_069 HL_59381.2 | |
| HL_8ZHC_072 | 1/LB/88:93 | GNRA | homologous HL_8OI5_070 HL_34789.4 | |
| HL_8ZHC_073 | 1/LC/47:56 | No text annotation | homologous HL_8P9A_186 HL_17803.1 | |
| HL_8ZHC_074 | 1/LC/69:89 | No text annotation | homologous HL_8P9A_187 HL_68571.1 | |
| HL_8ZHC_075 | 1/LC/108:114 | No text annotation | homologous HL_8CRE_076 NA | |
| HL_8ZHC_076 | 1/LC/124:129 | No text annotation | homologous HL_8CRE_077 NA | |
| HL_8ZHC_077 | 1/S2/7:17 | No text annotation | geometric HL_8CRE_191 HL_73535.1 | |
| HL_8ZHC_078 | 1/S2/70:81 | No text annotation | ||
| HL_8ZHC_079 | 1/S2/154:160 | GNRA related | geometric HL_8CRE_193 HL_34789.4 | |
| HL_8ZHC_080 | 1/S2/190:195 | No text annotation | ||
| HL_8ZHC_081 | 1/S2/230:235 | No text annotation | geometric HL_7KI3_001 HL_75660.7 | |
| HL_8ZHC_082 | 1/S2/243:250 | T-loop with 1 bulged base | geometric HL_8CRE_196 HL_67772.1 | |
| HL_8ZHC_084 | 1/S2/330:338 | No text annotation | geometric HL_8P9A_197 HL_87268.2 | |
| HL_8ZHC_085 | 1/S2/368:373 | No text annotation | geometric HL_8P9A_198 HL_93535.2 | |
| HL_8ZHC_086 | 1/S2/393:404 | No text annotation | geometric HL_8CRE_200 HL_86432.1 | |
| HL_8ZHC_087 | 1/S2/414:419 | UNCG | geometric HL_8ID2_001 HL_61337.3 | |
| HL_8ZHC_088 | 1/S2/450:456 | No text annotation | geometric HL_5ID6_001 HL_69752.4 | |
| HL_8ZHC_090 | 1/S2/516:536 | No text annotation | ||
| HL_8ZHC_091 | 1/S2/569:574 | No text annotation | geometric HL_8CRE_205 HL_93535.2 | |
| HL_8ZHC_092 | 1/S2/764:772 | No text annotation | geometric HL_8CRE_207 HL_11974.2 | |
| HL_8ZHC_093 | 1/S2/777:783 | No text annotation | ||
| HL_8ZHC_094 | 1/S2/829:843 | No text annotation | ||
| HL_8ZHC_095 | 1/S2/900:909 | No text annotation | geometric HL_8CRE_210 HL_38491.2 | |
| HL_8ZHC_096 | 1/S2/937:942 | GNRA | geometric HL_8P9A_210 HL_34789.4 | |
| HL_8ZHC_097 | 1/S2/994:1010 | No text annotation | ||
| HL_8ZHC_098 | 1/S2/1055:1064 | No text annotation | ||
| HL_8ZHC_099 | 1/S2/1084:1089 | GNRA | geometric HL_8P9A_213 HL_34789.4 | |
| HL_8ZHC_100 | 1/S2/1121:1126 | GNRA | geometric HL_8CRE_215 HL_34789.4 | |
| HL_8ZHC_101 | 1/S2/1188:1197 | No text annotation | geometric HL_8CRE_216 HL_97521.1 | |
| HL_8ZHC_102 | 1/S2/1237:1248 | No text annotation | ||
| HL_8ZHC_103 | 1/S2/1296:1301 | GNRA | geometric HL_7KKV_001 HL_34789.4 | |
| HL_8ZHC_104 | 1/S2/1309:1316 | No text annotation | ||
| HL_8ZHC_106 | 1/S2/1396:1402 | GNRA related | geometric HL_8G9Z_003 HL_37569.3 | |
| HL_8ZHC_108 | 1/S2/1550:1561 | No text annotation | ||
| HL_8ZHC_109 | 1/S2/1594:1602 | No text annotation | ||
| HL_8ZHC_111 | 1/S2/1778:1783 | GNRA variation | geometric HL_8CRE_225 HL_34789.4 | |
| HL_8ZHC_112 | 1/Ta/13:23 | No text annotation | homologous HL_7U2I_103 NA | |
| HL_8ZHC_113 | 1/Ta/32:40 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_8ZHC_114 | 1/Ta/53:63 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8ZHC_012 | No text annotation | ||
| HL_8ZHC_017 | No text annotation | ||
| HL_8ZHC_023 | No text annotation | ||
| HL_8ZHC_027 | No text annotation | ||
| HL_8ZHC_028 | No text annotation | ||
| HL_8ZHC_039 | No text annotation | ||
| HL_8ZHC_051 | No text annotation | ||
| HL_8ZHC_070 | No text annotation | ||
| HL_8ZHC_083 | No text annotation | ||
| HL_8ZHC_089 | No text annotation | ||
| HL_8ZHC_105 | No text annotation | ||
| HL_8ZHC_107 | No text annotation | ||
| HL_8ZHC_110 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8ZHC_001 | 1/LA/7:8, 1/LC/150:152 | No text annotation | homologous IL_8CRE_002 NA | |
| IL_8ZHC_002 | 1/LA/13:15, 1/LC/144:145 | Single bulged U | homologous IL_8P9A_232 IL_97561.3 | |
| IL_8ZHC_003 | 1/LA/27:28, 1/LA/56:58 | Single stack bend | homologous IL_8CRE_004 NA | |
| IL_8ZHC_004 | 1/LA/31:38, 1/LA/45:53 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 NA | |
| IL_8ZHC_005 | 1/LA/82:89, 1/LA/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_53348.1 | |
| IL_8ZHC_006 | 1/LA/123:124, 1/LA/144:149 | No text annotation | homologous IL_8CRE_007 NA | |
| IL_8ZHC_007 | 1/LA/125:127, 1/LA/141:143 | Isolated non-canonical cWW pair | homologous IL_8P9A_237 IL_01003.3 | |
| IL_8ZHC_008 | 1/LA/163:166, 1/LA/256:258 | No text annotation | ||
| IL_8ZHC_009 | 1/LA/166:171, 1/LA/247:256 | No text annotation | ||
| IL_8ZHC_010 | 1/LA/176:179, 1/LA/237:242 | No text annotation | ||
| IL_8ZHC_011 | 1/LA/189:191, 1/LA/204:205 | No text annotation | homologous IL_8CRE_013 NA | |
| IL_8ZHC_012 | 1/LA/336:339, 1/LC/25:27 | Isolated cWH basepair | geometric IL_406D_006 NA | |
| IL_8ZHC_013 | 1/LA/376:379, 1/LA/390:403 | No text annotation | geometric IL_5J7L_255 NA | |
| IL_8ZHC_014 | 1/LA/404:410, 1/LC/13:19 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
| IL_8ZHC_015 | 1/LA/412:414, 1/LC/9:11 | No text annotation | ||
| IL_8ZHC_016 | 1/LA/414:415, 1/LC/7:9 | No text annotation | ||
| IL_8ZHC_017 | 1/LA/416:419, 1/LC/4:6 | No text annotation | ||
| IL_8ZHC_018 | 1/LA/429:431, 1/LA/627:629 | Isolated non-canonical cWW pair | homologous IL_8P9A_245 IL_71625.3 | |
| IL_8ZHC_019 | 1/LA/511:512, 1/LA/576:578 | Single bulged A | homologous IL_8CRE_020 NA | |
| IL_8ZHC_020 | 1/LA/516:524, 1/LA/566:572 | No text annotation | ||
| IL_8ZHC_021 | 1/LA/530:537, 1/LA/552:560 | No text annotation | ||
| IL_8ZHC_022 | 1/LA/667:669, 1/LA/791:793 | Isolated non-canonical cWW pair | homologous IL_8CRE_023 NA | |
| IL_8ZHC_023 | 1/LA/679:683, 1/LA/695:699 | No text annotation | ||
| IL_8ZHC_024 | 1/LA/724:727, 1/LA/740:744 | No text annotation | ||
| IL_8ZHC_025 | 1/LA/751:752, 1/LA/778:780 | Single bulged A | homologous IL_8CRE_026 NA | |
| IL_8ZHC_026 | 1/LA/754:755, 1/LA/774:776 | No text annotation | homologous IL_8CRE_027 NA | |
| IL_8ZHC_027 | 1/LA/757:762, 1/LA/767:772 | No text annotation | homologous IL_8CRE_028 NA | |
| IL_8ZHC_028 | 1/LA/802:804, 1/LA/937:939 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.3 | |
| IL_8ZHC_029 | 1/LA/804:808, 1/LA/930:937 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_8ZHC_030 | 1/LA/832:833, 1/LA/858:860 | No text annotation | homologous IL_8CRE_032 NA | |
| IL_8ZHC_031 | 1/LA/833:837, 1/LA/854:858 | Triple sheared | homologous IL_8CRE_033 NA | |
| IL_8ZHC_032 | 1/LA/868:871, 1/LA/887:889 | No text annotation | homologous IL_8CRE_034 NA | |
| IL_8ZHC_033 | 1/LA/872:874, 1/LA/885:886 | Single bulged U | homologous IL_8P9A_260 IL_97561.3 | |
| IL_8ZHC_034 | 1/LA/906:908, 1/LA/918:922 | No text annotation | homologous IL_8CRE_036 NA | |
| IL_8ZHC_035 | 1/LA/953:955, 1/LA/964:966 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_71625.3 | |
| IL_8ZHC_036 | 1/LA/968:969, 1/LA/1110:1112 | Single stack bend | homologous IL_8CRE_038 NA | |
| IL_8ZHC_037 | 1/LA/974:981, 1/LA/1100:1105 | No text annotation | ||
| IL_8ZHC_038 | 1/LA/982:984, 1/LA/1098:1099 | No text annotation | homologous IL_8CRE_040 NA | |
| IL_8ZHC_039 | 1/LA/990:996, 1/LA/1051:1057 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_94128.1 | |
| IL_8ZHC_040 | 1/LA/996:997, 1/LA/1049:1051 | Minor groove platform | homologous IL_8CRE_042 NA | |
| IL_8ZHC_041 | 1/LA/998:1003, 1/LA/1045:1048 | C-loop with bulged stacked A's | homologous IL_8P9A_268 IL_16301.1 | |
| IL_8ZHC_042 | 1/LA/1005:1008, 1/LA/1040:1043 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.2 | |
| IL_8ZHC_043 | 1/LA/1008:1010, 1/LA/1038:1040 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_01003.3 | |
| IL_8ZHC_045 | 1/LA/1067:1071, 1/LA/1085:1089 | No text annotation | ||
| IL_8ZHC_046 | 1/LA/1073:1075, 1/LA/1082:1083 | Single bulged A | homologous IL_8P9A_273 IL_14190.2 | |
| IL_8ZHC_047 | 1/LA/1118:1121, 1/LA/1135:1138 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_8ZHC_049 | 1/LA/1166:1170, 1/LA/1327:1331 | UAA/GAN | homologous IL_8CRE_051 NA | |
| IL_8ZHC_050 | 1/LA/1172:1179, 1/LA/1324:1325 | SSU/LSU pseudoknot | homologous IL_8P9A_277 IL_07396.1 | |
| IL_8ZHC_051 | 1/LA/1179:1182, 1/LA/1322:1324 | Isolated cWH basepair | geometric IL_5F5F_003 IL_10892.2 | |
| IL_8ZHC_052 | 1/LA/1186:1193, 1/LA/1313:1318 | No text annotation | homologous IL_8CRE_054 NA | |
| IL_8ZHC_053 | 1/LA/1193:1204, 1/LA/1298:1313 | No text annotation | homologous IL_8CRE_055 NA | |
| IL_8ZHC_054 | 1/LA/1206:1208, 1/LA/1295:1296 | No text annotation | homologous IL_8CRE_056 NA | |
| IL_8ZHC_055 | 1/LA/1212:1214, 1/LA/1289:1291 | Isolated cWH basepair | geometric IL_4KTG_002 IL_10892.2 | |
| IL_8ZHC_056 | 1/LA/1214:1225, 1/LA/1282:1289 | No text annotation | ||
| IL_8ZHC_058 | 1/LA/1375:1377, 1/LA/1427:1430 | No text annotation | homologous IL_8P9A_285 IL_42997.5 | |
| IL_8ZHC_059 | 1/LA/1384:1386, 1/LA/1419:1420 | Single bulged A | homologous IL_8CRE_062 NA | |
| IL_8ZHC_060 | 1/LA/1387:1394, 1/LA/1414:1418 | Kink-turn | homologous IL_8CRE_063 NA | |
| IL_8ZHC_061 | 1/LA/1397:1399, 1/LA/1410:1411 | Single bulged A | homologous IL_8P9A_288 IL_14190.2 | |
| IL_8ZHC_062 | 1/LA/1443:1449, 1/LA/2353:2358 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_8ZHC_063 | 1/LA/1500:1504, 1/LA/1512:1514 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_8ZHC_064 | 1/LA/1531:1535, 1/LA/1584:1589 | UAA/GAN | homologous IL_8P9A_291 IL_08938.1 | |
| IL_8ZHC_066 | 1/LA/1617:1620, 1/LA/1823:1825 | No text annotation | ||
| IL_8ZHC_067 | 1/LA/1622:1623, 1/LA/1818:1821 | No text annotation | homologous IL_8CRE_070 NA | |
| IL_8ZHC_068 | 1/LA/1624:1630, 1/LA/1810:1817 | No text annotation | ||
| IL_8ZHC_069 | 1/LA/1644:1648, 1/LA/1805:1809 | Triple sheared | homologous IL_8CRE_072 NA | |
| IL_8ZHC_070 | 1/LA/1660:1662, 1/LA/1785:1787 | Isolated non-canonical cWW pair | homologous IL_8CRE_073 NA | |
| IL_8ZHC_071 | 1/LA/1668:1669, 1/LA/1777:1779 | Single bulged C | homologous IL_8P9A_297 IL_05642.2 | |
| IL_8ZHC_072 | 1/LA/1669:1670, 1/LA/1775:1777 | Single stack bend | homologous IL_8CRE_075 NA | |
| IL_8ZHC_073 | 1/LA/1693:1697, 1/LA/1746:1751 | No text annotation | homologous IL_8CRE_076 NA | |
| IL_8ZHC_074 | 1/LA/1701:1707, 1/LA/1735:1742 | No text annotation | ||
| IL_8ZHC_075 | 1/LA/1710:1716, 1/LA/1726:1732 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_8ZHC_076 | 1/LA/1882:1888, 1/LA/2345:2348 | No text annotation | homologous IL_8P9A_302 IL_89862.1 | |
| IL_8ZHC_077 | 1/LA/1894:1896, 1/LA/2337:2339 | No text annotation | homologous IL_8CRE_080 NA | |
| IL_8ZHC_078 | 1/LA/1897:1900, 1/LA/2335:2336 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.2 | |
| IL_8ZHC_079 | 1/LA/1897:1905, 1/LA/2332:2336 | No text annotation | geometric IL_8CRE_082 NA | |
| IL_8ZHC_080 | 1/LA/1900:1905, 1/LA/2332:2335 | No text annotation | homologous IL_8CRE_083 NA | |
| IL_8ZHC_081 | 1/LA/1917:1922, 1/LA/1927:1933 | No text annotation | homologous IL_8CRE_084 NA | |
| IL_8ZHC_082 | 1/LA/1939:1941, 1/LA/2105:2107 | Isolated non-canonical cWW pair | homologous IL_8CRE_085 NA | |
| IL_8ZHC_083 | 1/LA/1946:1947, 1/LA/2097:2100 | No text annotation | homologous IL_8CRE_086 NA | |
| IL_8ZHC_084 | 1/LA/1947:1952, 1/LA/2093:2097 | No text annotation | ||
| IL_8ZHC_085 | 1/LA/2123:2127, 1/LA/2324:2328 | No text annotation | ||
| IL_8ZHC_086 | 1/LA/2127:2128, 1/LA/2322:2324 | Single bulged A | homologous IL_8P9A_310 IL_14190.2 | |
| IL_8ZHC_087 | 1/LA/2155:2160, 1/LA/2172:2179 | No text annotation | homologous IL_8CRE_088 NA | |
| IL_8ZHC_088 | 1/LA/2195:2198, 1/LA/2244:2245 | Minor groove platform, major groove intercalation | homologous IL_8CRE_089 NA | |
| IL_8ZHC_089 | 1/LA/2199:2200, 1/LA/2240:2243 | No text annotation | homologous IL_8CRE_090 NA | |
| IL_8ZHC_090 | 1/LA/2203:2209, 1/LA/2234:2237 | No text annotation | ||
| IL_8ZHC_092 | 1/LA/2275:2276, 1/LA/2306:2309 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_8ZHC_093 | 1/LA/2276:2287, 1/LA/2303:2306 | No text annotation | homologous IL_8CRE_095 NA | |
| IL_8ZHC_094 | 1/LA/2390:2393, 1/LA/2985:2987 | No text annotation | homologous IL_8P9A_319 IL_75527.2 | |
| IL_8ZHC_095 | 1/LA/2395:2397, 1/LA/2980:2983 | No text annotation | homologous IL_8CRE_097 NA | |
| IL_8ZHC_096 | 1/LA/2408:2410, 1/LA/2810:2811 | No text annotation | homologous IL_8CRE_098 NA | |
| IL_8ZHC_097 | 1/LA/2411:2412, 1/LA/2806:2809 | Minor groove platform | homologous IL_8CRE_099 NA | |
| IL_8ZHC_098 | 1/LA/2422:2424, 1/LA/2603:2606 | No text annotation | homologous IL_8CRE_100 NA | |
| IL_8ZHC_100 | 1/LA/2519:2525, 1/LA/2583:2586 | No text annotation | homologous IL_8CRE_106 NA | |
| IL_8ZHC_101 | 1/LA/2613:2614, 1/LA/2624:2626 | Single bulged A | homologous IL_8P9A_325 IL_14190.2 | |
| IL_8ZHC_102 | 1/LA/2665:2667, 1/LA/2685:2689 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
| IL_8ZHC_103 | 1/LA/2717:2722, 1/LA/2732:2737 | No text annotation | ||
| IL_8ZHC_104 | 1/LA/2769:2772, 1/LA/2786:2787 | Multiple bulged bases | geometric IL_4YAZ_008 IL_71421.2 | |
| IL_8ZHC_105 | 1/LA/2822:2825, 1/LA/2862:2866 | No text annotation | homologous IL_8CRE_111 NA | |
| IL_8ZHC_106 | 1/LA/2825:2827, 1/LA/2861:2862 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_8ZHC_107 | 1/LA/2827:2829, 1/LA/2857:2861 | No text annotation | ||
| IL_8ZHC_108 | 1/LA/2834:2838, 1/LA/2848:2852 | Double sheared with non-canonical cWW | homologous IL_8CRE_114 NA | |
| IL_8ZHC_109 | 1/LA/2875:2876, 1/LA/2948:2950 | No text annotation | homologous IL_8CRE_115 NA | |
| IL_8ZHC_110 | 1/LA/2878:2880, 1/LA/2942:2946 | Isolated non-canonical cWW with bulges | homologous IL_8CRE_116 NA | |
| IL_8ZHC_111 | 1/LA/2880:2881, 1/LA/2939:2942 | No text annotation | homologous IL_8CRE_117 NA | |
| IL_8ZHC_112 | 1/LA/2888:2890, 1/LA/2911:2913 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_01003.3 | |
| IL_8ZHC_113 | 1/LA/2888:2891, 1/LA/2908:2913 | No text annotation | geometric IL_8P9A_338 IL_07469.3 | |
| IL_8ZHC_114 | 1/LA/2890:2891, 1/LA/2908:2911 | No text annotation | homologous IL_8CRE_120 NA | |
| IL_8ZHC_115 | 1/LA/2917:2919, 1/LA/2925:2927 | Isolated non-canonical cWW pair | homologous IL_8CRE_121 NA | |
| IL_8ZHC_116 | 1/LA/2959:2960, 1/LA/2969:2971 | Single bulged A | geometric IL_8P9A_399 IL_14190.2 | |
| IL_8ZHC_117 | 1/LA/3003:3006, 1/LA/3138:3143 | Double sheared | homologous IL_8CRE_123 NA | |
| IL_8ZHC_118 | 1/LA/3011:3013, 1/LA/3039:3041 | Isolated non-canonical cWW pair | homologous IL_8CRE_124 NA | |
| IL_8ZHC_119 | 1/LA/3017:3024, 1/LA/3029:3035 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_344 IL_62167.3 | |
| IL_8ZHC_120 | 1/LA/3046:3050, 1/LA/3090:3093 | No text annotation | homologous IL_8P9A_345 IL_06671.1 | |
| IL_8ZHC_121 | 1/LA/3053:3058, 1/LA/3083:3087 | No text annotation | homologous IL_8CRE_127 NA | |
| IL_8ZHC_122 | 1/LA/3062:3063, 1/LA/3076:3079 | No text annotation | homologous IL_8P9A_347 NA | |
| IL_8ZHC_123 | 1/LA/3102:3106, 1/LA/3126:3130 | UAA/GAN | homologous IL_8P9A_348 IL_08938.1 | |
| IL_8ZHC_124 | 1/LA/3163:3165, 1/LA/3283:3285 | Single stack bend | geometric IL_9DFE_091 IL_15011.2 | |
| IL_8ZHC_125 | 1/LA/3176:3178, 1/LA/3209:3210 | Single bulged A | homologous IL_8P9A_351 IL_14190.2 | |
| IL_8ZHC_126 | 1/LA/3178:3187, 1/LA/3203:3209 | No text annotation | homologous IL_8P9A_352 IL_28855.1 | |
| IL_8ZHC_127 | 1/LA/3224:3228, 1/LA/3257:3259 | No text annotation | ||
| IL_8ZHC_128 | 1/LA/3232:3234, 1/LA/3251:3253 | Isolated non-canonical cWW pair | homologous IL_8P9A_354 IL_01003.3 | |
| IL_8ZHC_129 | 1/LA/3234:3237, 1/LA/3248:3251 | Tandem non-canonical cWW pairs | homologous IL_8P9A_355 IL_71194.2 | |
| IL_8ZHC_130 | 1/LA/3299:3302, 1/LA/3310:3313 | Tandem non-canonical cWW pairs | homologous IL_8CRE_135 NA | |
| IL_8ZHC_131 | 1/LA/3317:3319, 1/LA/3386:3387 | No text annotation | homologous IL_8CRE_136 NA | |
| IL_8ZHC_132 | 1/LA/3323:3325, 1/LA/3379:3382 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_8ZHC_133 | 1/LA/3327:3329, 1/LA/3372:3377 | No text annotation | homologous IL_8CRE_138 NA | |
| IL_8ZHC_134 | 1/LA/3331:3336, 1/LA/3366:3370 | No text annotation | homologous IL_8P9A_360 IL_48489.1 | |
| IL_8ZHC_135 | 1/LA/3339:3341, 1/LA/3362:3363 | No text annotation | homologous IL_8CRE_140 NA | |
| IL_8ZHC_136 | 1/LA/3341:3344, 1/LA/3359:3362 | Double sheared; A in syn | homologous IL_8P9A_362 IL_58355.2 | |
| IL_8ZHC_137 | 1/LA/3348:3349, 1/LA/3352:3355 | Multiple bulged bases | homologous IL_8P9A_363 IL_44609.2 | |
| IL_8ZHC_138 | 1/LB/15:16, 1/LB/63:65 | Single bulged A | homologous IL_8P9A_364 IL_14190.2 | |
| IL_8ZHC_139 | 1/LB/21:29, 1/LB/49:58 | No text annotation | ||
| IL_8ZHC_140 | 1/LB/29:30, 1/LB/47:49 | Single stack bend | homologous IL_8P9A_367 IL_15011.2 | |
| IL_8ZHC_141 | 1/LB/32:36, 1/LB/41:45 | No text annotation | homologous IL_8OI5_138 IL_58103.12 | |
| IL_8ZHC_142 | 1/LB/72:80, 1/LB/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_369 IL_62167.3 | |
| IL_8ZHC_143 | 1/LB/84:87, 1/LB/94:96 | Isolated non-canonical cWW pair | homologous IL_8OI5_140 IL_01003.3 | |
| IL_8ZHC_144 | 1/LC/64:66, 1/LC/93:96 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
| IL_8ZHC_145 | 1/LC/68:69, 1/LC/89:91 | Single bulged U | homologous IL_8P9A_372 IL_97561.3 | |
| IL_8ZHC_146 | 1/S2/24:26, 1/S2/600:601 | Single bulged C | geometric IL_7KGA_004 IL_05642.2 | |
| IL_8ZHC_147 | 1/S2/37:41, 1/S2/466:471 | No text annotation | geometric IL_8CRE_392 IL_12697.1 | |
| IL_8ZHC_148 | 1/S2/42:48, 1/S2/431:433 | No text annotation | geometric IL_8P9A_376 IL_88082.2 | |
| IL_8ZHC_149 | 1/S2/50:52, 1/S2/428:429 | Minor groove platform | geometric IL_8CRE_394 IL_34520.3 | |
| IL_8ZHC_150 | 1/S2/58:63, 1/S2/87:89 | No text annotation | geometric IL_8P9A_378 IL_61299.6 | |
| IL_8ZHC_151 | 1/S2/64:69, 1/S2/82:86 | No text annotation | geometric IL_8P9A_379 IL_21667.2 | |
| IL_8ZHC_152 | 1/S2/109:112, 1/S2/302:305 | No text annotation | ||
| IL_8ZHC_153 | 1/S2/113:116, 1/S2/300:301 | Multiple bulged bases | geometric IL_8P9A_381 IL_71421.2 | |
| IL_8ZHC_154 | 1/S2/116:122, 1/S2/295:300 | No text annotation | ||
| IL_8ZHC_155 | 1/S2/144:149, 1/S2/165:171 | No text annotation | ||
| IL_8ZHC_156 | 1/S2/150:153, 1/S2/161:164 | No text annotation | ||
| IL_8ZHC_157 | 1/S2/186:189, 1/S2/196:199 | No text annotation | ||
| IL_8ZHC_158 | 1/S2/204:213, 1/S2/252:263 | No text annotation | ||
| IL_8ZHC_159 | 1/S2/265:267, 1/S2/288:289 | Single bulged A | geometric IL_8P9A_388 IL_14190.2 | |
| IL_8ZHC_160 | 1/S2/270:273, 1/S2/283:285 | No text annotation | ||
| IL_8ZHC_162 | 1/S2/311:316, 1/S2/348:355 | Kink-turn with non-sequential stacking | geometric IL_8CRE_408 IL_46174.4 | |
| IL_8ZHC_163 | 1/S2/318:323, 1/S2/345:346 | No text annotation | ||
| IL_8ZHC_164 | 1/S2/318:325, 1/S2/342:346 | No text annotation | ||
| IL_8ZHC_165 | 1/S2/323:325, 1/S2/342:345 | No text annotation | ||
| IL_8ZHC_166 | 1/S2/325:327, 1/S2/341:342 | Single stack bend | geometric IL_7QR8_009 NA | |
| IL_8ZHC_167 | 1/S2/363:365, 1/S2/376:381 | No text annotation | geometric IL_8CRE_410 IL_93336.1 | |
| IL_8ZHC_168 | 1/S2/366:368, 1/S2/373:375 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.2 | |
| IL_8ZHC_169 | 1/S2/389:391, 1/S2/406:408 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.2 | |
| IL_8ZHC_170 | 1/S2/411:413, 1/S2/420:422 | No text annotation | geometric IL_8CRE_412 IL_42997.5 | |
| IL_8ZHC_171 | 1/S2/439:441, 1/S2/463:464 | Single bulged U | geometric IL_8P9A_396 IL_97561.3 | |
| IL_8ZHC_172 | 1/S2/443:447, 1/S2/460:461 | C-loop | geometric IL_8P9A_397 IL_26900.1 | |
| IL_8ZHC_173 | 1/S2/447:448, 1/S2/458:460 | No text annotation | geometric IL_8CRE_415 IL_28408.2 | |
| IL_8ZHC_177 | 1/S2/514:516, 1/S2/536:543 | No text annotation | ||
| IL_8ZHC_178 | 1/S2/550:557, 1/S2/587:588 | SSU/LSU pseudoknot | geometric IL_8CRE_421 IL_11411.1 | |
| IL_8ZHC_179 | 1/S2/557:559, 1/S2/586:587 | No text annotation | geometric IL_8CRE_422 IL_97561.3 | |
| IL_8ZHC_180 | 1/S2/562:568, 1/S2/575:583 | No text annotation | geometric IL_8P9A_404 IL_52042.1 | |
| IL_8ZHC_181 | 1/S2/616:622, 1/S2/1104:1105 | No text annotation | geometric IL_8CRE_424 IL_20847.1 | |
| IL_8ZHC_182 | 1/S2/624:626, 1/S2/973:975 | Isolated non-canonical cWW pair | geometric IL_8CRE_425 IL_01003.3 | |
| IL_8ZHC_183 | 1/S2/627:631, 1/S2/968:972 | tSH-tHW-tHS | geometric IL_8CRE_426 IL_05821.1 | |
| IL_8ZHC_184 | 1/S2/646:648, 1/S2/686:688 | No text annotation | ||
| IL_8ZHC_185 | 1/S2/746:747, 1/S2/802:805 | Minor groove platform | geometric IL_9DFE_073 IL_24264.1 | |
| IL_8ZHC_186 | 1/S2/747:759, 1/S2/791:802 | No text annotation | ||
| IL_8ZHC_187 | 1/S2/817:827, 1/S2/845:854 | No text annotation | ||
| IL_8ZHC_188 | 1/S2/865:866, 1/S2/962:965 | Major groove platform; stack outside cWW | geometric IL_8P9A_417 IL_74641.2 | |
| IL_8ZHC_189 | 1/S2/868:869, 1/S2/958:960 | Single bulged U | geometric IL_6UFH_004 IL_97561.3 | |
| IL_8ZHC_190 | 1/S2/871:874, 1/S2/953:956 | Tandem non-canonical cWW pairs | geometric IL_8CRE_433 IL_15225.2 | |
| IL_8ZHC_191 | 1/S2/874:878, 1/S2/950:953 | Tandem non-canonical cWW pairs | geometric IL_8CRE_434 IL_15225.2 | |
| IL_8ZHC_192 | 1/S2/885:899, 1/S2/910:927 | No text annotation | ||
| IL_8ZHC_193 | 1/S2/982:983, 1/S2/1017:1019 | No text annotation | ||
| IL_8ZHC_194 | 1/S2/983:990, 1/S2/1014:1017 | No text annotation | ||
| IL_8ZHC_195 | 1/S2/990:994, 1/S2/1010:1014 | tSH-tHW-tHS | geometric IL_4WF9_052 IL_05821.1 | |
| IL_8ZHC_196 | 1/S2/1034:1036, 1/S2/1095:1101 | No text annotation | geometric IL_8CRE_439 IL_82706.2 | |
| IL_8ZHC_197 | 1/S2/1041:1044, 1/S2/1074:1077 | Tandem non-canonical cWW pairs | geometric IL_8CRE_440 IL_15225.2 | |
| IL_8ZHC_198 | 1/S2/1051:1053, 1/S2/1066:1067 | Single bulged U | geometric IL_8P9A_232 IL_97561.3 | |
| IL_8ZHC_199 | 1/S2/1111:1118, 1/S2/1129:1134 | No text annotation | ||
| IL_8ZHC_200 | 1/S2/1146:1147, 1/S2/1630:1632 | Single bulged A | geometric IL_5J7L_039 NA | |
| IL_8ZHC_201 | 1/S2/1149:1151, 1/S2/1627:1628 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_8ZHC_202 | 1/S2/1157:1160, 1/S2/1617:1621 | No text annotation | ||
| IL_8ZHC_203 | 1/S2/1173:1175, 1/S2/1464:1466 | Isolated non-canonical cWW pair | geometric IL_8P9A_432 IL_01003.3 | |
| IL_8ZHC_204 | 1/S2/1223:1233, 1/S2/1252:1260 | No text annotation | ||
| IL_8ZHC_206 | 1/S2/1268:1270, 1/S2/1439:1440 | Single bulged U | geometric IL_3MEI_001 IL_97561.3 | |
| IL_8ZHC_207 | 1/S2/1270:1275, 1/S2/1437:1439 | No text annotation | ||
| IL_8ZHC_208 | 1/S2/1276:1278, 1/S2/1430:1436 | No text annotation | geometric IL_8P9A_440 IL_34117.1 | |
| IL_8ZHC_209 | 1/S2/1280:1281, 1/S2/1426:1428 | Single bulged A | geometric IL_8CRE_455 IL_14190.2 | |
| IL_8ZHC_210 | 1/S2/1290:1292, 1/S2/1323:1325 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10892.2 | |
| IL_8ZHC_211 | 1/S2/1306:1308, 1/S2/1317:1318 | Minor groove platform | geometric IL_8P9A_443 IL_34520.3 | |
| IL_8ZHC_213 | 1/S2/1389:1393, 1/S2/1405:1412 | No text annotation | ||
| IL_8ZHC_214 | 1/S2/1480:1487, 1/S2/1519:1527 | No text annotation | ||
| IL_8ZHC_215 | 1/S2/1488:1498, 1/S2/1509:1518 | No text annotation | ||
| IL_8ZHC_216 | 1/S2/1540:1545, 1/S2/1567:1571 | No text annotation | ||
| IL_8ZHC_217 | 1/S2/1545:1546, 1/S2/1565:1567 | Single stack bend | geometric IL_4WF9_089 IL_15011.2 | |
| IL_8ZHC_218 | 1/S2/1636:1638, 1/S2/1764:1767 | No text annotation | geometric IL_8CRE_466 IL_18228.1 | |
| IL_8ZHC_219 | 1/S2/1638:1641, 1/S2/1760:1764 | No text annotation | geometric IL_8P9A_453 IL_25873.2 | |
| IL_8ZHC_220 | 1/S2/1642:1644, 1/S2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_8CRE_468 IL_01003.3 | |
| IL_8ZHC_221 | 1/S2/1644:1647, 1/S2/1753:1757 | No text annotation | geometric IL_8CRE_401 IL_65740.1 | |
| IL_8ZHC_222 | 1/S2/1650:1652, 1/S2/1748:1750 | Isolated non-canonical cWW pair | geometric IL_8CRE_470 IL_01003.3 | |
| IL_8ZHC_223 | 1/S2/1653:1656, 1/S2/1744:1747 | Double sheared | geometric IL_8P9A_457 IL_58355.2 | |
| IL_8ZHC_224 | 1/S2/1656:1672, 1/S2/1729:1744 | No text annotation | ||
| IL_8ZHC_225 | 1/S2/1672:1674, 1/S2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_8CRE_085 NA | |
| IL_8ZHC_226 | 1/S2/1675:1678, 1/S2/1723:1726 | No text annotation | ||
| IL_8ZHC_227 | 1/S2/1678:1682, 1/S2/1719:1723 | Triple sheared | geometric IL_8CRE_476 IL_15190.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8ZHC_044 | No text annotation | ||
| IL_8ZHC_048 | No text annotation | ||
| IL_8ZHC_057 | No text annotation | ||
| IL_8ZHC_065 | No text annotation | ||
| IL_8ZHC_091 | Isolated cWH basepair | ||
| IL_8ZHC_099 | No text annotation | ||
| IL_8ZHC_161 | Isolated non-canonical cWW pair | ||
| IL_8ZHC_174 | Single bulged A | ||
| IL_8ZHC_175 | No text annotation | ||
| IL_8ZHC_176 | No text annotation | ||
| IL_8ZHC_205 | No text annotation | ||
| IL_8ZHC_212 | No text annotation | ||
| IL_8ZHC_228 | No text annotation | ||
| IL_8ZHC_229 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8ZHC_001 | 1/LA/113:123, 1/LA/149:158, 1/LA/263:267 | No text annotation | homologous J3_8CRE_001 NA | |
| J3_8ZHC_002 | 1/LA/113:124, 1/LA/144:158, 1/LA/263:267 | No text annotation | ||
| J3_8ZHC_003 | 1/LA/185:189, 1/LA/205:214, 1/LA/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_8ZHC_004 | 1/LA/340:356, 1/LA/363:368, 1/LC/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8ZHC_005 | 1/LA/369:376, 1/LA/403:404, 1/LC/19:20 | No text annotation | geometric J3_8CRE_005 NA | |
| J3_8ZHC_006 | 1/LA/369:379, 1/LA/390:404, 1/LC/19:20 | No text annotation | homologous J3_8CRE_006 NA | |
| J3_8ZHC_007 | 1/LA/501:502, 1/LA/587:596, 1/LA/605:610 | No text annotation | homologous J3_8P9A_048 J3_86133.1 | |
| J3_8ZHC_008 | 1/LA/813:819, 1/LA/904:906, 1/LA/922:925 | No text annotation | homologous J3_8CRE_009 NA | |
| J3_8ZHC_009 | 1/LA/827:830, 1/LA/862:866, 1/LA/891:896 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_8ZHC_010 | 1/LA/985:986, 1/LA/1061:1065, 1/LA/1091:1097 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_8ZHC_012 | 1/LA/1478:1484, 1/LA/1856:1858, 1/LA/1870:1873 | No text annotation | homologous J3_8CRE_013 NA | |
| J3_8ZHC_013 | 1/LA/1487:1490, 1/LA/1836:1842, 1/LA/1851:1853 | No text annotation | homologous J3_8P9A_054 J3_76012.1 | |
| J3_8ZHC_014 | 1/LA/1525:1530, 1/LA/1590:1594, 1/LA/1611:1612 | No text annotation | homologous J3_8CRE_015 NA | |
| J3_8ZHC_015 | 1/LA/1536:1541, 1/LA/1550:1560, 1/LA/1578:1583 | No text annotation | ||
| J3_8ZHC_016 | 1/LA/1630:1631, 1/LA/1640:1644, 1/LA/1809:1810 | No text annotation | homologous J3_8CRE_017 NA | |
| J3_8ZHC_017 | 1/LA/1653:1657, 1/LA/1790:1791, 1/LA/1795:1800 | No text annotation | homologous J3_8CRE_018 NA | |
| J3_8ZHC_018 | 1/LA/2431:2434, 1/LA/2511:2516, 1/LA/2589:2596 | No text annotation | homologous J3_8P9A_059 J3_89060.1 | |
| J3_8ZHC_019 | 1/LA/2528:2532, 1/LA/2545:2562, 1/LA/2577:2580 | No text annotation | homologous J3_8CRE_020 NA | |
| J3_8ZHC_020 | 1/LA/2650:2652, 1/LA/2753:2764, 1/LA/2792:2797 | No text annotation | homologous J3_8CRE_021 NA | |
| J3_8ZHC_021 | 1/LA/2663:2665, 1/LA/2689:2691, 1/LA/2700:2705 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_8ZHC_022 | 1/LA/2885:2888, 1/LA/2913:2915, 1/LA/2929:2935 | No text annotation | homologous J3_8CRE_023 NA | |
| J3_8ZHC_023 | 1/LA/3165:3175, 1/LA/3211:3219, 1/LA/3264:3283 | No text annotation | ||
| J3_8ZHC_024 | 1/LA/3297:3299, 1/LA/3313:3317, 1/LA/3387:3389 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_8ZHC_025 | 1/LB/9:14, 1/LB/66:68, 1/LB/110:112 | No text annotation | ||
| J3_8ZHC_026 | 1/LC/43:45, 1/LC/58:64, 1/LC/96:101 | No text annotation | ||
| J3_8ZHC_027 | 1/S2/41:42, 1/S2/433:439, 1/S2/464:466 | No text annotation | geometric J3_8CRE_071 J3_58657.1 | |
| J3_8ZHC_028 | 1/S2/41:48, 1/S2/431:439, 1/S2/464:466 | No text annotation | geometric J3_8P9A_069 J3_63856.1 | |
| J3_8ZHC_029 | 1/S2/213:228, 1/S2/237:243, 1/S2/250:252 | No text annotation | ||
| J3_8ZHC_030 | 1/S2/633:635, 1/S2/861:865, 1/S2/965:966 | No text annotation | geometric J3_8P9A_071 J3_01633.1 | |
| J3_8ZHC_031 | 1/S2/633:635, 1/S2/861:866, 1/S2/962:966 | No text annotation | geometric J3_8P9A_072 J3_17385.5 | |
| J3_8ZHC_032 | 1/S2/760:763, 1/S2/773:775, 1/S2/785:790 | No text annotation | geometric J3_8P9A_073 J3_97642.2 | |
| J3_8ZHC_033 | 1/S2/881:884, 1/S2/928:936, 1/S2/943:947 | No text annotation | geometric J3_8P9A_074 J3_23895.1 | |
| J3_8ZHC_034 | 1/S2/1037:1040, 1/S2/1078:1083, 1/S2/1090:1094 | No text annotation | ||
| J3_8ZHC_035 | 1/S2/1161:1164, 1/S2/1581:1587, 1/S2/1609:1616 | No text annotation | ||
| J3_8ZHC_036 | 1/S2/1168:1171, 1/S2/1468:1470, 1/S2/1574:1577 | No text annotation | geometric J3_8CRE_079 J3_44359.1 | |
| J3_8ZHC_037 | 1/S2/1178:1187, 1/S2/1198:1209, 1/S2/1454:1461 | No text annotation | ||
| J3_8ZHC_038 | 1/S2/1212:1221, 1/S2/1262:1268, 1/S2/1440:1451 | No text annotation | ||
| J3_8ZHC_039 | 1/S2/1281:1288, 1/S2/1327:1332, 1/S2/1419:1426 | No text annotation | ||
| J3_8ZHC_040 | 1/S2/1293:1294, 1/S2/1303:1306, 1/S2/1318:1322 | No text annotation | geometric J3_8CRE_083 J3_76043.4 | |
| J3_8ZHC_041 | 1/S2/1334:1351, 1/S2/1374:1389, 1/S2/1412:1417 | No text annotation | ||
| J3_8ZHC_042 | 1/S2/1470:1474, 1/S2/1533:1540, 1/S2/1571:1574 | No text annotation | geometric J3_8CRE_086 J3_03192.1 | |
| J4_8ZHC_001 | 1/LA/112:113, 1/LA/267:272, 1/LA/293:299, 1/LA/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_8ZHC_002 | 1/LA/185:189, 1/LA/205:208, 1/LA/212:214, 1/LA/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_8ZHC_003 | 1/LA/1450:1456, 1/LA/1474:1475, 1/LA/1876:1879, 1/LA/2351:2352 | No text annotation | homologous J4_8CRE_003 NA | |
| J4_8ZHC_004 | 1/LA/1491:1495, 1/LA/1519:1524, 1/LA/1613:1614, 1/LA/1828:1835 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_8ZHC_005 | 1/LA/1673:1674, 1/LA/1692:1693, 1/LA/1751:1752, 1/LA/1771:1772 | No text annotation | homologous J4_8CRE_005 NA | |
| J4_8ZHC_006 | 1/LA/2129:2133, 1/LA/2145:2149, 1/LA/2185:2189, 1/LA/2316:2321 | No text annotation | homologous J4_8CRE_006 NA | |
| J4_8ZHC_007 | 1/LA/2191:2193, 1/LA/2247:2249, 1/LA/2265:2275, 1/LA/2309:2314 | No text annotation | ||
| J4_8ZHC_008 | 1/LA/2653:2657, 1/LA/2711:2715, 1/LA/2739:2741, 1/LA/2750:2752 | No text annotation | homologous J4_8CRE_008 NA | |
| J4_8ZHC_009 | 1/LA/3009:3011, 1/LA/3041:3042, 1/LA/3097:3099, 1/LA/3133:3135 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_8ZHC_010 | 1/S2/99:107, 1/S2/307:309, 1/S2/357:361, 1/S2/383:384 | No text annotation | ||
| J4_8ZHC_011 | 1/S2/622:624, 1/S2/975:980, 1/S2/1021:1032, 1/S2/1103:1104 | No text annotation | ||
| J4_8ZHC_012 | 1/Ta/7:10, 1/Ta/26:28, 1/Ta/44:50, 1/Ta/66:67 | tRNA junction | homologous J4_1IL2_001 J4_95067.1 | |
| J5_8ZHC_001 | 1/LA/20:22, 1/LC/35:42, 1/LC/102:107, 1/LC/115:116, 1/LC/137:139 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_8ZHC_002 | 1/LA/657:662, 1/LA/798:801, 1/LA/940:943, 1/LA/1374:1375, 1/LA/1430:1436 | No text annotation | homologous J5_8CRE_002 NA | |
| J5_8ZHC_003 | 1/LA/674:677, 1/LA/701:705, 1/LA/712:720, 1/LA/748:750, 1/LA/781:786 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_8ZHC_004 | 1/LA/1905:1913, 1/LA/1937:1938, 1/LA/2108:2109, 1/LA/2113:2121, 1/LA/2330:2332 | No text annotation | homologous J5_8CRE_004 NA | |
| J5_8ZHC_005 | 1/LA/2398:2405, 1/LA/2814:2822, 1/LA/2866:2875, 1/LA/2950:2956, 1/LA/2974:2979 | No text annotation | ||
| J5_8ZHC_006 | 1/LA/2415:2418, 1/LA/2610:2613, 1/LA/2626:2627, 1/LA/2649:2650, 1/LA/2797:2803 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_8ZHC_007 | 1/S2/31:37, 1/S2/471:479, 1/S2/509:514, 1/S2/543:546, 1/S2/592:595 | No text annotation | ||
| J5_8ZHC_008 | 1/S2/31:37, 1/S2/471:479, 1/S2/509:516, 1/S2/536:546, 1/S2/592:595 | No text annotation | ||
| J5_8ZHC_009 | 1/S2/54:57, 1/S2/90:97, 1/S2/386:388, 1/S2/409:411, 1/S2/422:426 | No text annotation | ||
| J5_8ZHC_010 | 1/S2/124:143, 1/S2/172:182, 1/S2/203:204, 1/S2/263:265, 1/S2/289:293 | No text annotation | ||
| J5_8ZHC_011 | 1/S2/124:143, 1/S2/172:182, 1/S2/203:204, 1/S2/263:267, 1/S2/288:293 | No text annotation | ||
| J5_8ZHC_012 | 1/S2/636:642, 1/S2/692:700, 1/S2/738:745, 1/S2/806:817, 1/S2/854:860 | No text annotation | ||
| J6_8ZHC_001 | 1/LA/22:27, 1/LA/58:68, 1/LA/75:79, 1/LA/106:110, 1/LA/321:331, 1/LC/32:35 | No text annotation | ||
| J6_8ZHC_002 | 1/LA/2415:2418, 1/LA/2610:2613, 1/LA/2626:2627, 1/LA/2649:2652, 1/LA/2753:2764, 1/LA/2792:2803 | No text annotation | ||
| J7_8ZHC_001 | 1/LA/948:953, 1/LA/966:967, 1/LA/1113:1116, 1/LA/1140:1145, 1/LA/1156:1160, 1/LA/1337:1338, 1/LA/1364:1369 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8ZHC_011 | No text annotation |
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