HL_8ZHC_014

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8ZHC|1|LA|C|647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_014 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.0573

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8ZHC|1|LA|U|639
8ZHC|1|LA|C|640
8ZHC|1|LA|U|641
8ZHC|1|LA|U|642
8ZHC|1|LA|G|643
8ZHC|1|LA|A|644
8ZHC|1|LA|A|645
8ZHC|1|LA|A|646
8ZHC|1|LA|C|647
8ZHC|1|LA|A|648

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain Lc

Large ribosomal subunit protein uL15

Chain Lg

Large ribosomal subunit protein eL32