HL_8ZHC_025

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8ZHC|1|LA|G|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_025 not in the Motif Atlas

Homologous match to HL_8P9A_137

Geometric discrepancy: 0.0604

The information below is about HL_8P9A_137

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8ZHC|1|LA|G|1125
8ZHC|1|LA|G|1126
8ZHC|1|LA|U|1127
8ZHC|1|LA|A|1128
8ZHC|1|LA|A|1129
8ZHC|1|LA|G|1130
8ZHC|1|LA|C|1131

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16