HL_8ZHC_032

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8ZHC|1|LA|G|1506, 8ZHC|1|LA|U|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_032 not in the Motif Atlas

Homologous match to HL_8CRE_031

Geometric discrepancy: 0.0959

The information below is about HL_8CRE_031

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8ZHC|1|LA|A|1505
8ZHC|1|LA|G|1506
8ZHC|1|LA|C|1507
8ZHC|1|LA|A|1508
8ZHC|1|LA|G|1509
8ZHC|1|LA|U|1510
8ZHC|1|LA|U|1511

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LR

Large ribosomal subunit protein uL22A

Chain LT

Large ribosomal subunit protein eL19A

Chain pp

Peptide 2k