HL_8ZHC_047

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCAAAGUGAAGAAAUUCAACCAAG

Length

24 nucleotides

Bulged bases

8ZHC|1|LA|A|2218, 8ZHC|1|LA|U|2224, 8ZHC|1|LA|U|2225, 8ZHC|1|LA|C|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LA|U|2210
8ZHC|1|LA|C|2211
8ZHC|1|LA|A|2212
8ZHC|1|LA|A|2213
8ZHC|1|LA|A|2214
8ZHC|1|LA|G|2215
8ZHC|1|LA|U|2216
8ZHC|1|LA|G|2217
8ZHC|1|LA|A|2218
8ZHC|1|LA|A|2219
8ZHC|1|LA|G|2220
8ZHC|1|LA|A|2221
8ZHC|1|LA|A|2222
8ZHC|1|LA|A|2223
8ZHC|1|LA|U|2224
8ZHC|1|LA|U|2225
8ZHC|1|LA|C|2226
8ZHC|1|LA|A|2227
8ZHC|1|LA|A|2228
8ZHC|1|LA|C|2229
8ZHC|1|LA|C|2230
8ZHC|1|LA|A|2231
8ZHC|1|LA|A|2232
8ZHC|1|LA|G|2233

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lk

Large ribosomal subunit protein eL36A

Chain Lq

Large ribosomal subunit protein eL42A