HL_8ZHC_051

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

8ZHC|1|LA|A|2535, 8ZHC|1|LA|U|2536, 8ZHC|1|LA|U|2537, 8ZHC|1|LA|C|2538, 8ZHC|1|LA|A|2539, 8ZHC|1|LA|U|2540

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LA|G|2533
8ZHC|1|LA|A|2534
8ZHC|1|LA|A|2535
8ZHC|1|LA|U|2536
8ZHC|1|LA|U|2537
8ZHC|1|LA|C|2538
8ZHC|1|LA|A|2539
8ZHC|1|LA|U|2540
8ZHC|1|LA|U|2541
8ZHC|1|LA|U|2542
8ZHC|1|LA|U|2543
8ZHC|1|LA|C|2544

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LJ

Large ribosomal subunit protein eL8A

Chain Li

Large ribosomal subunit protein eL34A

Chain SQ

Small ribosomal subunit protein eS1A