HL_8ZHC_052

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

8ZHC|1|LA|A|2568, 8ZHC|1|LA|U|2570, 8ZHC|1|LA|C|2571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_052 not in the Motif Atlas

Geometric match to HL_4V9F_021

Geometric discrepancy: 0.1974

The information below is about HL_4V9F_021

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8ZHC|1|LA|C|2567
8ZHC|1|LA|A|2568
8ZHC|1|LA|U|2569
8ZHC|1|LA|U|2570
8ZHC|1|LA|C|2571
8ZHC|1|LA|G|2572

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lb

Large ribosomal subunit protein eL27A