HL_8ZHC_059
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 8ZHC|1|LA|G|2776
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHC_059 not in the Motif Atlas
- Homologous match to HL_8CRE_059
- Geometric discrepancy: 0.103
- The information below is about HL_8CRE_059
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
8ZHC|1|LA|C|2775
8ZHC|1|LA|G|2776
8ZHC|1|LA|G|2777
8ZHC|1|LA|A|2778
8ZHC|1|LA|A|2779
8ZHC|1|LA|U|2780
8ZHC|1|LA|U|2781
8ZHC|1|LA|U|2782
8ZHC|1|LA|G|2783
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Lk
- Large ribosomal subunit protein eL36A
- Chain Lq
- Large ribosomal subunit protein eL42A
Coloring options: