HL_8ZHC_060

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8ZHC|1|LA|U|2841, 8ZHC|1|LA|U|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_060 not in the Motif Atlas

Homologous match to HL_8CRE_060

Geometric discrepancy: 0.4399

The information below is about HL_8CRE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8ZHC|1|LA|C|2839
8ZHC|1|LA|G|2840
8ZHC|1|LA|U|2841
8ZHC|1|LA|U|2842
8ZHC|1|LA|C|2843
8ZHC|1|LA|A|2844
8ZHC|1|LA|U|2845
8ZHC|1|LA|A|2846
8ZHC|1|LA|G|2847

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain Lo

Large ribosomal subunit protein eL40A

Chain eR

Eukaryotic peptide chain release factor subunit 1