HL_8ZHC_065

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_065 not in the Motif Atlas

Homologous match to HL_8CRE_065

Geometric discrepancy: 0.0681

The information below is about HL_8CRE_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8ZHC|1|LA|U|3067
8ZHC|1|LA|G|3068
8ZHC|1|LA|A|3069
8ZHC|1|LA|U|3070
8ZHC|1|LA|C|3071
8ZHC|1|LA|A|3072

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain LW

Large ribosomal subunit protein eL22A

Chain Lf

Large ribosomal subunit protein eL31A