HL_8ZHC_079

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8ZHC|1|S2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_079 not in the Motif Atlas

Geometric match to HL_8CRE_193

Geometric discrepancy: 0.1667

The information below is about HL_8CRE_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8ZHC|1|S2|G|154
8ZHC|1|S2|U|155
8ZHC|1|S2|A|156
8ZHC|1|S2|A|157
8ZHC|1|S2|U|158
8ZHC|1|S2|U|159
8ZHC|1|S2|C|160

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain Sd

Small ribosomal subunit protein eS24A