HL_8ZHC_091

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_091 not in the Motif Atlas

Geometric match to HL_8CRE_205

Geometric discrepancy: 0.0838

The information below is about HL_8CRE_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8ZHC|1|S2|C|569
8ZHC|1|S2|A|570
8ZHC|1|S2|G|571
8ZHC|1|S2|C|572
8ZHC|1|S2|C|573
8ZHC|1|S2|G|574

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain Sc

Small ribosomal subunit protein uS12A